Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1681 237 3e-57 seq157 208 1e-48 >seq1681 Length=36401 Score = 237 bits (262), Expect = 3e-57 Identities = 965/1497 (64%), Gaps = 59/1497 (4%) Strand=Plus/Plus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCG-GCCATGTCTATGAT 212752 ||||||| ||||| |||||| ||| | || | | ||| ||| ||||||||||| | Sbjct 649 AGGTTCAACGACTGCGACTGGTCAATGTACTGGCCGCGGTC-GCGTGCCATGTCTATCAG 707 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | | ||| | | ||||||||||||| | | | ||| | ||||| || |||| ||| Sbjct 708 CTTGCGCTGCGGAATCTCCCACACGGTCCGGTAAAGCTCTCTCAGGTCGTCCGGGATGCC 767 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 | || | | | ||| || ||| | | | || ||||| ||||||||| Sbjct 768 GTTAATAGTGAGGATAGAGCCGTTGTAGGAGATGATCTCGTTCCGCATCGACTCGTTCCA 827 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 || || | | ||| | |||| |||| ||| || | |||| || || Sbjct 828 TAGACCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCT 887 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | |||||| ||| ||||||||| || ||||||||| || || Sbjct 888 CAGCACACGGCGGACGTAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAG 947 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 |||||| | || || || |||||||| || ||||| || ||| | || || Sbjct 948 AATCTGCGAGGTAGACGCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGCCCAC 1007 Query 213053 CTCGCCGATGAGG--CGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGT 213108 || || || | | || || ||| ||||||||||| | ||| | | | | Sbjct 1008 CT-GC--ATCACCTTCTCCTTGAGGCTG-GCCCAGTCCCAGC-----GACCGCTGTTGGG 1058 Query 213109 CC-----TTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG 213163 || ||| ||||||||||| ||||||| ||||| | ||| | |||||||||| Sbjct 1059 CCGCGGGTTC---TTCCACATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCTT 1115 Query 213164 GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTA 213223 | | | ||| ||||| | |||||| ||||| || |||| || | ||||| | Sbjct 1116 GAAGGTCTCGTACGGGCCCTCCTCCTTCGCCAGTTCCATCGACGACTCAACCGCAGCAAA 1175 Query 213224 GTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCAT 213283 ||| || ||||| || ||||| ||| | | || ||||| | || || |||| Sbjct 1176 GTAAATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGCCTCCGCCGAGACAAACGGCAG 1235 Query 213284 CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCT 213343 | |||| | ||| | || || |||||||| || |||| ||||||||| | || | Sbjct 1236 CCGCATGAGAATGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGACGGTTGCG 1295 Query 213344 CAGGTTAGACT-TGGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTG 213401 || |||| || ||| || | ||| | ||||| |||||| |||||| | ||| Sbjct 1296 CATGTTA--CTGTGGCGCGCCGTCTCGACCGGGTAGTAGTTGCGGTCGATAACGCGGTTT 1353 Query 213402 AGGTTGCGGGTGGCCACTTTGGT--GACATGGGCCAGGTA--CTCGTGATTGAACACGTA 213457 |||||||| ||| |||| | | || || || | || ||| |||||| || Sbjct 1354 AGGTTGCGCGTGA----TTTGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCGCG 1409 Query 213458 GCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 | | | | || || ||||| |||||| ||| |||||||| || ||| ||| Sbjct 1410 CTTCTCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTC 1469 Query 213518 CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAG 213577 ||| | |||||||| | || || ||||| ||||| ||| ||| ||||| || Sbjct 1470 CTGCGGCGACGTGTACTCGACAATTTCCGTGCATAGGTTCGAGCACTTGATCGTGCCGAG 1529 Query 213578 GTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGT 213637 |||| ||||| ||||| |||| | ||||||||||| ||| | || ||| || Sbjct 1530 ATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGT 1589 Query 213638 CTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCCGCCTG 213695 ||| | ||| ||| | || || ||| ||| | | | ||||| || | | || Sbjct 1590 CTCGATCTGCGACTCGAGGAT--GGCAAACCACACCTCCTGGGCCTGGATCGTCT---TG 1644 Query 213696 ACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGA- 213753 || || ||| | | | |||||| | ||||||||| | || || | || || Sbjct 1645 AC-GCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCCTCACCATAGCA 1703 Query 213754 --CCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCT 213811 | ||| || ||||| || | ||| ||| || |||| | || || | | Sbjct 1704 ATCGCTG---AGACCCGGGCACGTGTTCGGATCCATCAGCGTCCACTTTCCCTCGCTTTT 1760 Query 213812 GACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCT 213871 || | | ||| ||||| || |||| |||||||||| ||| ||||| | || | | Sbjct 1761 CACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTG 1820 Query 213872 CTCGTCCACTCCAGAGTT---TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCA 213928 || ||| ||| | ||| ||| |||| |||||| |||||||||| || ||||| Sbjct 1821 GTCATCCTTTCCCGTGTTGCGTTTCAGCAGC---AGAAAGCCAAAGATGTCGGCATGCCA 1877 Query 213929 CGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCT 213985 ||||| | |||| ||| || |||||| | ||| ||||||||||||||| | Sbjct 1878 GGGCTCGAGATAGACGGCGAAAGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCG 1937 Query 213986 GGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCC 214045 ||| ||||||||| ||| || | || || |||||||| ||| |||||||| || Sbjct 1938 GGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTGGTGCC 1997 Query 214046 CGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTA 214105 ||||| || ||| | || | | ||| || | || || ||||| ||||| Sbjct 1998 AGCTATGTAGCTGCCAGCAGCGCGGATATTGTGCACGTGCAGACCAATGCCGCCGGCTGC 2057 Query 214106 CTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 ||| ||||| ||| || | | | || || ||||||| | |||||||| || Sbjct 2058 TTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTC 2114 >seq157 Length=1104 Score = 208 bits (230), Expect = 1e-48 Identities = 568/855 (66%), Gaps = 15/855 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| ||||| |||| || |||||| |||| Sbjct 118 CTGGTACTCACCCACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 177 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||| || | | | ||| || | | ||| | | | | ||||| Sbjct 178 CATGAAGTCGAACGGCTGCGTCGAGTTGTAGTGCTTCTCCTCGCCGAGCGATACAAGCAG 237 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||||||| |||||||||| | | |||||| ||||||||| || || Sbjct 238 CCGGTCCGCGACGAACTCGATGTACTGCGCCATGAGCTCTGCGTTCATGCCAATCAGCCG 297 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||| || | || ||||| ||| || | ||| || ||| | | |||| Sbjct 298 CACCGGCAGCGCGTCACAGATGAACTCTCGCTCGATGTTCACCGCATCCACAATGATCTC 357 Query 48079 CTTAACGCGGGACTCT-GAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| | || |||||| | |||| | || |||| ||| || Sbjct 358 CAGCACGCG---CTCGCGCGGCAGTTTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGC 414 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | || ||||| || ||||||| ||||| ||| || || || Sbjct 415 GAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGG 474 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| | || ||| || || || ||||| ||||| Sbjct 475 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCC 534 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||||| || ||||| | | |||| ||| | ||||| || || || |||||| Sbjct 535 TTCCACCGCAGCGAAGCCTATCAGCCGCTC-CTGAAAGCT-CGCGCTGCTCCC-GATCCA 591 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||| ||| |||||| || ||||||| ||| || | | || Sbjct 592 CCGCACGGCCCACTCCGCCTTCCTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAG 651 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||||| | || || |||||| | |||| |||| Sbjct 652 CCGCA-GCT-TCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCC 709 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | ||||||||||||||| || | ||||| ||||| | Sbjct 710 GAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTC 769 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | || | |||||||| |||||| || || | || ||| Sbjct 770 ACATCGCTCATGAAGCGCTGCGCAAGATTCTCGACGACTATGCCGTCGCTGCCGGCGAAG 829 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 |||||||| || || || | ||| || ||||| || | | || || |||| ||| Sbjct 830 AAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGCCGCCCAGTCCTTC 889 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTA 48672 | ||| ||||||||||| | || ||||| ||||||| | | | | ||| | ||||| Sbjct 890 ATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTTGTA 948 Query 48673 CATGCCCCATATGTC 48687 | ||| ||| ||||| Sbjct 949 CTTGCGCCAGATGTC 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931502210791680