Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq157 178 2e-39 seq1681 158 2e-33 >seq157 Length=1104 Score = 178 bits (196), Expect = 2e-39 Identities = 369/537 (69%), Gaps = 17/537 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||| | || ||||| || |||| ||| |||||| | | |||| || || | | Sbjct 925 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCGGCGCTGAACGA 866 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 | |||| ||| || ||||| ||||| | || ||||| || | | || || ||||| Sbjct 865 CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGT 806 Query 25632 GAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGC-CAAG 25686 ||||||||| |||| || | |||| || || ||| || ||| ||||| | | Sbjct 805 CGTCGAGAATCT-TGCGCAGCGCTTCATGAGCGATGTGAAG---GTGCCAGAGGCGCGCG 750 Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746 ||| |||||| |||||| || || || || | ||||| ||| ||| | ||| Sbjct 749 CGTT-CTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTG 691 Query 25747 CTGATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCA 25805 ||| |||||||| || ||| || |||| || | |||||| | || || || Sbjct 690 CTGGACACGTACATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATACAGAC 632 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865 || || ||||| ||||||||||| ||||||| || ||||||| ||| ||||| Sbjct 631 GATCCCGTGCATCCAGAGGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGC---AGCGC 575 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | ||| ||||||||| ||| ||| ||||| ||||| ||||| || || ||| || Sbjct 574 GAGCTTTCAGGAGCGGCTGATAGGCTTCGCTGCGGTGGAAGGCATTTTCTTTTCCGGGTC 515 Query 25926 GTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 ||| |||| | | |||||||| ||| || || ||||| |||||| || || Sbjct 514 GTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGCA 456 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||||| | ||||||||||| |||| || || || |||||||| |||| Sbjct 455 ACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACA 399 >seq1681 Length=36401 Score = 158 bits (174), Expect = 2e-33 Identities = 517/793 (65%), Gaps = 23/793 (3%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| ||||| ||| ||| | | || |||| | || || || || || Sbjct 1446 GGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATTTCCGTGCATAG 1505 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| ||||||||| || || || | || || || ||||||| ||| |||||||| Sbjct 1506 GTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTT 1565 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 |||||| || || || || || ||||| | ||| | | | || || ||| | || Sbjct 1566 GTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAACCACACCTC 1625 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGAG 221949 |||| || || ||||||| | | |||||| || | | || ||||| Sbjct 1626 -CTGGGCCTGGA--TCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCG---TAGAG 1679 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | ||||||| ||||| || ||| || || || ||| || ||| |||||| Sbjct 1680 CCGCTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGATCCATCAG 1739 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||| | | | ||| || | | ||| || || || |||||||||||||| | Sbjct 1740 CGTCCACTTTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTA 1799 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCC---GTTGTTTTTCCTCAGATCCAAAAA 222126 ||||| || | || ||||| || ||| || |||| |||| ||| || ||| Sbjct 1800 GAAGAGGTCGCGGGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCAGCAG---CAGAAA 1856 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 |||| ||||| || ||||| ||||| ||||||||||| | |||||| ||||| Sbjct 1857 GCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCGCTTACC 1916 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 ||| ||||| ||||| | | |||||||| ||| || | || || || || Sbjct 1917 GCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCC 1976 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCA- 222304 ||| || ||||||||||| ||||| | ||| || || || || ||| Sbjct 1977 GTTCGACGTGCCGTTGGTGCCAGCTATGTA---GCTGCCAGCAGCGCGGATATTGTGCAC 2033 Query 222305 -GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || || || || ||||| ||| ||||| ||| || |||||| ||||| Sbjct 2034 GTGCAGACCAATGCCGCCGGCTGCTTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTA 2093 Query 222364 GATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 |||||| || || ||||||||| |||| || ||| || || || ||| || | | Sbjct 2094 GATGCCGTCGATGCTGTCCTCCTTCGACG-CCACCAGGAAGCACGAGCTCATTTGCGGCT 2152 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | | || | ||||||||| || || || ||||||| || ||| ||||| | ||||| | Sbjct 2153 TTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTTGACATGA 2212 Query 222483 GATCGTACGTCTC 222495 | || |||||||| Sbjct 2213 GGTCATACGTCTC 2225 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 221035 AGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTC 221094 |||||| |||| | | | |||| | |||||| || |||||||||| | | | Sbjct 783 AGAGCCGTTGTAGGAGATGATCTCGTTCCGCATCGACTCGTTCCATAGACCACGCGCGAT 842 Query 221095 CAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTG 221154 || || |||| | || ||||||||| || |||| || || ||||| | | Sbjct 843 GAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGAC 902 Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||| | ||| || ||||| || |||| || |||||||||||| || ||||| | || Sbjct 903 GTAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTAGA 962 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCC 221256 ||||| |||||||| || |||||||| ||||||||| || Sbjct 963 CGCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGCC 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928814299058880