Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1681 125 9e-24 >seq1681 Length=36401 Score = 125 bits (138), Expect = 9e-24 Identities = 551/861 (64%), Gaps = 11/861 (1%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| | ||||||||||| ||||| | ||||| ||||| ||| | | ||| Sbjct 2288 CCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCACAGATCTGAAGAATGTG 2229 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 ||||| || ||| ||||| | || | |||| ||||| || || |||||||| Sbjct 2228 CGTGAGACGTATGACCTCATGTCAAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 2169 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || |||| ||||| ||| | |||||||| | || ||||||||| Sbjct 2168 AACGCCGGCACCCCAAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAGGAC 2109 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCT-CAAAGTGGGCTGG 75450 ||| |||| ||||| | || || | ||||||||| ||| ||||| | | || Sbjct 2108 AGCATCGACGGCATCTACGACACGCTCAAGGAGTGTGCCGTGATCAGCAAAGCAGCC-GG 2050 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 || ||||| ||||| | || || | | || | | || || || || | Sbjct 2049 CGGCATTGGTCTGCACGTGCACAATATCCGCGCTGCTGGCAGCTAC-ATAGCTGGCACCA 1991 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 1990 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 1931 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| | |||| ||||| | || || ||||||| Sbjct 1930 TGGACCAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCTCGAGCCCTGGCATG 1871 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| ||| | | || || | | || |||| || | || || || Sbjct 1870 CCGACATCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAGGATGACCAGCGCGCCC 1811 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || ||||| | | |||||||| ||||| || || |||| ||| || || || | | Sbjct 1810 GCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGT-GAAAAGCGAG 1752 Query 75747 GTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 | || ||| | || | ||| ||| | || |||||| ||| || ||| ||| Sbjct 1751 GGAAAGTGGACGCTGATGGATCCGAACACGTGCCCGGGTCTCAGCGATTGCTATGG-TGA 1693 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACC 75864 ||||||||| |||||| || || ||||| | | | ||| | | Sbjct 1692 GGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGATCCA 1633 Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 ||| || || ||| || || ||| | || |||| ||||| || || | || Sbjct 1632 GGCCCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACGGGGGGGCCGTTCAT 1573 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 || |||||||| || || |||| ||| ||||| |||||| | || || |||||| | Sbjct 1572 CCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTCGGCACGATCAAGTG 1513 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 ||| || || |||||||||||| | |||||||| | | |||||||| || ||||| Sbjct 1512 CTCGAACCTATGCACGGAAATTGTCGAGTACACGTCGCCGCAGGAGACGGCGGTGTGCAA 1453 Query 76045 TTTGGCATCAATCGCCCTTCC 76065 | || || ||||| || || Sbjct 1452 CCTCGCCTCCATCGCGCTGCC 1432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550010145760