Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1110 185 1e-41 seq1069 116 5e-21 >seq1110 Length=73125 Score = 185 bits (204), Expect = 1e-41 Identities = 461/693 (67%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || || || | || || || ||||| || || || || | | || || | Sbjct 64585 GCCATCGGCATTGACCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGACCAG 64644 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || ||| |||| ||||| || ||||| || || || |||||||||||||| || Sbjct 64645 GTGGAAATCATCGCGAACGACCAGGGTAACCGCACGACACCGTCGTACGTTGCCTTCACC 64704 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || || | || |||||||| || || ||| || |||||||| | ||| Sbjct 64705 GAGGCAGAGCGCCTGATCGGCGATGCCGCGAAGAACCAGGTGGCCATGAACCCGAGCAAC 64764 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || |||||||||||||| | || || |||||||| ||| | | || Sbjct 64765 ACCGTGTTTGACGCGAAGCGCATGATCGGCCGCAAGTTCGACGATCCTGACCTTCAGTCG 64824 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || ||| || || ||||| | || || Sbjct 64825 GACATGAAGCACTGGCCCT-TCAAGGTGA--CCGTCAAGGATGGCAAGCCGGTCATCAAC 64881 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | || ||| || || | || |||| || || || ||| |||||||| | Sbjct 64882 GTCGAGTACCAGGGTCAGTCCAAG-ACCTTCTTCCCAGAGGAGATCTCGGCTATGGTGCT 64940 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||||| ||||| | | | | || | || || || || || || || Sbjct 64941 GCAGAAGATGAAGGAGACGGCGGAGGCCTACCTCGGCACGACCGTCAAGGACGCCGTCGT 65000 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || ||||||| || || || || |||||||| || ||||| | | || Sbjct 65001 CACCGTCCCGGCGTACTTCAACGACTCGCAGCGCCAGGCGACGAAAGACGCCGGCTCCAT 65060 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || || || ||| || | || ||||| || || || || ||||| || || || || Sbjct 65061 CGCTGGCCTCAACGTCCTGCGCATCATCAACGAGCCGACCGCCGCTGCTATCGCGTACGG 65120 Query 195838 TCTGGAC--AAGAACA-AGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 ||||| | | || || | | ||| || || || | ||||| || || || || || Sbjct 65121 CATGGACCGCAAAGCAGAGAAGGGAGAGAAGAACGTGCTCATCTTCGACCTTGGCGGCGG 65180 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| ||||| | || || | || || || | ||||| || ||||| || || Sbjct 65181 CACGTTCGATGTGACGCTGCTGACGATCGAGTCCGGCGTGTTCGAGGTGAAGGCGACCGC 65240 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || || || || || || || || || Sbjct 65241 GGGTGACACGCACCTTGGCGGCGAGGACTTTGA 65273 >seq1069 Length=60850 Score = 116 bits (128), Expect = 5e-21 Identities = 231/340 (68%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 195650 ATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGAT 195709 |||||| || ||||||||||||| | || | ||| | || | | ||||| | Sbjct 4971 ATGGTGCTGCAAAAGATGAAGGAGATCTCCGAGACCTTCCTCGGCGAGAAGGTGAAGAAC 5030 Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || ||||| || || || ||||| | |||| | || || ||||| || |||||| | Sbjct 5031 GCCGTCGTGACGGTGCCAGCGTACTTTAATGATGCGCAGCGCCAGGCAACGAAGGACTCC 5090 Query 195770 GCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | || || || || ||| ||| | | || ||||| || || |||||||| || || Sbjct 5091 GGTAAGATCGCCGGCCTTAAC-GTCGTCCGCATCATCAACGAGCCCACAGCGGCGGCCAT 5149 Query 195829 TGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 || || || || ||||||| | || || || | || |||| || ||||| Sbjct 5150 AGCGTACGGGCT------CAACAAGGCTGGCGAGAAGAACATCCTGGTCTTCGACCTCGG 5203 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGC 195948 ||| || ||||| ||||| || || || | || || | ||| | ||||| || || Sbjct 5204 TGGCGGCACGTTCGATGTGTCCCTGCTGACCATCGACGAGGGTTTCTTCGAGGTGGTCGC 5263 Query 195949 TACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 ||| |||||||| || || |||||||| || |||||| Sbjct 5264 TACGAACGGTGATACCCACCTTGGTGGTGAGGACTTCGAT 5303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657840797443440