Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1681 187 3e-41 seq157 159 4e-33 seq2382 89.7 6e-12 seq1556 87.8 2e-11 >seq1681 Length=36401 Score = 187 bits (206), Expect = 3e-41 Identities = 211/280 (75%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||| || |||| ||| |||||||| ||||| |||||||| ||||| Sbjct 1920 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 1979 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAA 1630180 ||| |||||||||||| || | |||| ||| || ||||| | |||||| || ||| Sbjct 1980 CGACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTGCACGTGCAG 2039 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | || ||||||||||| | ||| ||| | || |||| ||||||||||||||||||| Sbjct 2040 A-CCAATGCCGCCGGCTGCTTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTAGATGC 2098 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | ||||| ||| ||||| |||| || |||||||| ||||||| | | | Sbjct 2099 CGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTTGGGG 2158 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||||||||| ||||| || || || || |||||| || Sbjct 2159 TGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAA 2198 Score = 105 bits (116), Expect = 8e-17 Identities = 317/493 (64%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 1628110 GGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACG 1628169 ||||| || | | || |||||||| |||| ||| ||||||| ||| ||| Sbjct 1432 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 1491 Query 1628170 ATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGG 1628229 || || ||||| ||||| | || | |||| || || |||| |||||| | | | Sbjct 1492 ATTTCCGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTG 1551 Query 1628230 TTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATG 1628289 ||| |||||||||| ||| ||| | ||| | || ||||||||||||| | ||| |||| Sbjct 1552 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATG 1611 Query 1628290 GCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCGGCCCTNNNNNNNNNNNNN 1628348 || |||| | || | || | | || | ||| ||||||||| Sbjct 1612 GCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGC-CGCGGCCCTCGGACTCGTAGCG 1670 Query 1628349 NNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCC-GGGCGCCTCGGACG 1628407 ||||| || | || ||||| ||| || || |||| | | | || Sbjct 1671 CTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGT-GTTCG 1729 Query 1628408 GACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCC 1628467 || | |||| ||| | || || | | | || | |||||| || || ||| Sbjct 1730 GATCCATCAGCGTCCACTTTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCC 1789 Query 1628468 ACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGT 1628527 |||| ||||| ||||||||||| || || | || ||||| || ||| ||| || Sbjct 1790 ACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCAGCA 1849 Query 1628528 CGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGC 1628587 || || | | |||||||| ||||| ||||| || ||| ||| || |||||||||| Sbjct 1850 GCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGC 1909 Query 1628588 GCTTGCCGCCGCC 1628600 |||| |||||||| Sbjct 1910 GCTTACCGCCGCC 1922 Score = 95.1 bits (104), Expect = 1e-13 Identities = 88/109 (81%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 |||| ||||| ||||||||||||| ||| || || |||| ||||| ||| |||||| | Sbjct 1253 CGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGACGGTTGCGCATGTTACTGTGGCGCG 1312 Query 1627928 CC-TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGC 1627975 || || | |||||||||| |||| |||||| |||||||| ||||||| Sbjct 1313 CCGTCTCG-ACCGGGTAGTAGTTGCGGTCGATAACGCGGTTTAGGTTGC 1360 Score = 93.3 bits (102), Expect = 5e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 |||| || || ||||| || ||| | |||| |||| ||| || || | || |||| Sbjct 824 TCCATAGACCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGC 883 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| ||||| ||||||||| ||||| | |||| | |||| |||||| Sbjct 884 CGCTCAGCACACGGCGGACGTAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGC 943 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 | || |||||||| || | || || |||||| | || || || || ||||||||||||| Sbjct 944 CGAGAATCTGCGAGGTAGACGCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGC 1003 Query 1627475 C 1627475 | Sbjct 1004 C 1004 >seq157 Length=1104 Score = 159 bits (176), Expect = 4e-33 Identities = 214/298 (72%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 708 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 767 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| | || |||||||||||| |||||| Sbjct 768 TCACATCGCTCATGAAGCGCTGCGCAAGATTCTCGACGACTATGCCGTCGCTGCCGGCGA 827 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||| ||||| | |||| | |||||| Sbjct 828 AGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGCCGCCCAGTCCT 887 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 888 TCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 947 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 948 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAACGGGTTCTC 1005 Score = 156 bits (172), Expect = 5e-32 Identities = 181/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | ||| || ||||| |||||||||| ||||||||| Sbjct 113 GCCTTCTGGTACTCACCCACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAGCGAGATC 172 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || ||||||||||| || |||||||| | Sbjct 173 ATCTCCATGAAGTCGAACGGCTGCGTCGAGTTGTAGTGCTTCTCCTCGCCGAGCGATACA 232 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| |||||| | ||||||||||| || Sbjct 233 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATGAGCTCTGCGTTCATGCCAATC 292 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| || | | |||||| |||||| | || || || || ||| Sbjct 293 AGCCGCACCGGCAGCGCGTCACAGATGAACTCTCGCTCGATGTTCACCGCATCCACAATG 352 Query 868931 ATCT 868934 |||| Sbjct 353 ATCT 356 Score = 86.0 bits (94), Expect = 8e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||||| || | || || ||||| || |||||||| Sbjct 430 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGACCGCGCTT 489 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || | |||||||| || || || || ||||| || || || || || Sbjct 490 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCTTCCACCGCAGCGAA 549 Query 869299 GCCGATGAGCCGCTC 869313 ||| || |||||||| Sbjct 550 GCCTATCAGCCGCTC 564 >seq2382 Length=24834 Score = 89.7 bits (98), Expect = 6e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||| ||| | || || | |||||||| | ||||||||||| || | Sbjct 18345 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGTGTAGA 18286 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 |||| | || || | ||||||| | |||||| | ||||| | || || || ||||| Sbjct 18285 CTTTTCGGCCCGTACGGTCATCACCGGCGACCCAAACATCGATGTCGATGAAGTCGGCGT 18226 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 || | | ||| || |||||| ||||| || ||||| |||| Sbjct 18225 ACCGTTCTCGGTCGCCATGACGCTGACCTTCCCGGAGCGGGTGA 18182 >seq1556 Length=11391 Score = 87.8 bits (96), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| || || ||||| | | ||||||| Sbjct 5946 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCTATTATCCCTTACCCCAACCA 6005 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||||||| | |||||||||| ||||||| | |||||||| |||||| Sbjct 6006 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAG 6051 Score = 87.8 bits (96), Expect = 2e-11 Identities = 260/398 (65%), Gaps = 13/398 (3%) Strand=Plus/Plus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCG-CTCCACCGAGGACATGCCCTGGTC 733168 |||||||| |||||||||||| |||| | | | ||| ||||||||||||| || Sbjct 6667 CGCCACGGACAAAAGGGCACCAACGGCATCCAGTTTCGCCAG-GAGGACATGCCCT--TC 6723 Query 733169 GCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCAT 733228 | |||| |||| | ||| ||| || | |||||||| |||||||| || || ||||| Sbjct 6724 AAC-CGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCACGCCATTCCCTCCCGCAT 6782 Query 733229 GACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACAT 733288 ||| ||| | | || |||| | ||| ||||||||||| ||| | ||||| | Sbjct 6783 GACGGTGGCCCACCTGATCGAAACGCTCGCCGGCAAGGTGGCGTGCTACAAGGGCGGCGA 6842 Query 733289 CGGCGACGGCACGCCCTTTGGCGGCGTCACCNNNNNNNNNNNNNNNNNNGAGTTG---GC 733345 | ||| ||||| || || ||| | | |||| || Sbjct 6843 GGTGTACGCAACGCCGTTCTGCTCCGTTGTCGTGGACGACTTTGGCAAGGCGTTGCATGC 6902 Query 733346 CCGCCACGGGTGCGAGCGCTACGGCAAGGAGGTGCTCTACCACCCGCACACCGGCGAGCC 733405 || || ||| |||| |||||||| ||| |||||| | ||||||||| ||| Sbjct 6903 CCTCC---GGTCGCAGCGGTACGGCAACGAGTGCCTCTACAATGGGCACACCGGTCTGCC 6959 Query 733406 CATGGCGGCGTTGATCTTC-TCGGCGCCGGTCTACTACCAGGCCCTCCGGCACGTGGCCA 733464 ||| ||||||||| ||||| || || |||||| ||| |||| | | Sbjct 6960 GCTGGACCATTTGATCTTCTTCGGC-CCCACCTTTTACCAGCGCCTGAAGCACTTATCTG 7018 Query 733465 TCGACAAGATCCACGCGCGCCCGCGCGGTCCCGTGCAG 733502 |||||||||||||| ||||| ||||| || ||||| Sbjct 7019 GTGACAAGATCCACGCACGCCCCCGCGGGCCTCTGCAG 7056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106923616077759