Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1681 156 7e-32 seq157 154 2e-31 seq2382 93.3 7e-13 seq1556 91.5 2e-12 >seq1681 Length=36401 Score = 156 bits (172), Expect = 7e-32 Identities = 197/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || |||| ||| |||||||| ||||| ||||| || ||||| Sbjct 1920 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 1979 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCG-GCAA 2073655 ||| |||||||||||| || | |||| ||| | ||||| | |||||| || ||| Sbjct 1980 CGACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTGCACGTGCAG 2039 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 | || ||||||||||| || ||| ||| | || |||| || ||||| |||||||||| Sbjct 2040 A-CCAATGCCGCCGGCTGCTTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTAGATGC 2098 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCG 2073775 | ||||| ||| ||||| ||| ||| |||||||| ||||||| | | Sbjct 2099 CGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTTGGGG 2158 Query 2073776 TGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||| || ||||| || || || || Sbjct 2159 TGCCGGCGTTAAAGAGGGTCGGGGTGGC 2186 Score = 98.7 bits (108), Expect = 2e-14 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 |||| || || ||||| || | | | ||| |||| ||| || || | || |||| Sbjct 824 TCCATAGACCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGC 883 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| ||||| ||||||||| |||| | |||| | |||| |||||| Sbjct 884 CGCTCAGCACACGGCGGACGTAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGC 943 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 | || |||||||| || | || || |||||| | || || ||||| ||||||||||||| Sbjct 944 CGAGAATCTGCGAGGTAGACGCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGC 1003 Query 2069744 CGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCGCT 2069792 | ||| |||| | || ||| | ||||||||||||| ||||| Sbjct 1004 CCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGACCGCT 1052 Score = 89.7 bits (98), Expect = 8e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || | ||||||||| || ||||||| |||| ||||| ||||| || || | Sbjct 1761 CACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTG 1820 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || ||||| || ||| |||||| || || | | || |||||| ||||| || Sbjct 1821 GTCATCCTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGATGTCGGCATGCCAGGG 1880 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||| ||| || |||||||||||||| |||||||| Sbjct 1881 CTCGAGATAGACGGCGAAAGCGCCCTTGCGCTTACCGCCGCC 1922 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 || ||||| || || ||||||||||||| ||| || || |||| ||||| ||| ||| Sbjct 1249 AAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGACGGTTGCGCATGTTACTGTGG 1308 Query 2070193 CGGGCC-TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 || ||| || | |||||||||| |||| |||||| |||||||| |||||| Sbjct 1309 CGCGCCGTCTCG-ACCGGGTAGTAGTTGCGGTCGATAACGCGGTTTAGGTTG 1359 >seq157 Length=1104 Score = 154 bits (170), Expect = 2e-31 Identities = 199/274 (73%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | ||| Sbjct 86 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCACCCACCTTCTTCTCA 142 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| |||||||||| |||||||||| |||||| | |||||| | | || Sbjct 143 AAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAG 202 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 |||||||||||| |||||||| ||||||| ||||| |||||||| || |||||| Sbjct 203 TTGTAGTGCTTCTCCTCGCCGAGCGATACAAGCAGCCGGTCCGCGACGAACTCGATGTAC 262 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || |||||| | ||||||||||| || ||| ||| ||||||| || | || ||| Sbjct 263 TGCGCCATGAGCTCTGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCACAGATGAAC 322 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| |||||| | || || || | ||||||| Sbjct 323 TCTCGCTCGATGTTCACCGCATCCACAATGATCT 356 Score = 132 bits (146), Expect = 8e-25 Identities = 189/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| | || |||||| Sbjct 755 GCCTCTGGCACCTTCACATCGCTCATGAAGCGCTGCGCAAGATTCTCGACGACTATGCCG 814 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 815 TCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 874 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 875 GCCGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 934 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 935 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 994 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 995 AACGGGTTCTCCTGCTGCAGCGGCTC 1020 >seq2382 Length=24834 Score = 93.3 bits (102), Expect = 7e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||| ||| | |||||| | |||||||| | ||||||||||| || | Sbjct 18345 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGTGTAGA 18286 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||| || | ||||||| |||||| | ||||| | || || || ||||| Sbjct 18285 CTTTTCGGCCCGTACGGTCATCACCGGCGACCCAAACATCGATGTCGATGAAGTCGGCGT 18226 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 || | | ||| || |||||| ||||| || ||||| |||| Sbjct 18225 ACCGTTCTCGGTCGCCATGACGCTGACCTTCCCGGAGCGGGTGA 18182 >seq1556 Length=11391 Score = 91.5 bits (100), Expect = 2e-12 Identities = 148/207 (71%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| || || ||||| | ||||||| Sbjct 5946 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCTATTATCCCTTACCCCAACCA 6005 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 6006 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 6064 Query 653014 GTCGCTC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAG 653071 ||| ||| | | || || ||| |||||| | || | ||||| ||||||||| Sbjct 6065 ACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCATGTCCTCTTCTACCCGCAA 6123 Query 653072 GTGCCGCTGGTGCAGAC---GGCCATG 653095 |||||||||| || ||||||| Sbjct 6124 AAACCGCTGGTGCGCACCAAGGCCATG 6150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915966954028253