Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1681 425 5e-114 seq157 224 1e-53 seq1037 134 1e-26 >seq1681 Length=36401 Score = 425 bits (470), Expect = 5e-114 Identities = 985/1470 (67%), Gaps = 35/1470 (2%) Strand=Plus/Plus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 || |||| ||||| || || |||| ||||| || | ||||||||| ||||| | Sbjct 836 GCGCGATGAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACAC 895 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 | || | || | ||| || || || || || ||||||||||||| | |||||||| Sbjct 896 GGCGGACGTAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCG 955 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 ||| | || || |||||| || |||||||| |||||||||| || | | | Sbjct 956 AGGTAGACGCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGCCCACCTGCATCA 1015 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG-CGGCGACGGTGTCACG-----TTCCACA 148464 || ||| || |||||||||||| | | || | | | || ||||||| Sbjct 1016 CCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGACCGCTGTTGGGCCGCGGGTTCTTCCACA 1075 Query 148465 TGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT 148524 ||||| ||||||||||||| ||| || |||||||||| | | | |||||| || | Sbjct 1076 TGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCTTGAAGGTCTCGTACGGGCCCT 1135 Query 148525 GCGCCGCCGCCAGTTCGCAGCT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583 | || ||||||||| || | || ||| | ||| | |||||||||| ||| || Sbjct 1136 CCTCCTTCGCCAGTTC-CATCGACGACTCAACCGCAGCAAAGTAAATCGTTTCGAAGATC 1194 Query 148584 TGCCTGTTGA---GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAAC 148640 | ||| | || ||||| ||| | | | |||||| |||| | | || Sbjct 1195 TCTGCGTTCACCCGCTGCGCCTCCGCCGAGA---CAAACGGCAGCCGCATGAGAATGAAG 1251 Query 148641 GCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC 148700 ||||| || || ||||| ||||| | ||| ||||| |||| ||||| | ||||| Sbjct 1252 GCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGACGGTTGCGCATGTTACTGTGGCGC 1311 Query 148701 GCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760 || |||||| ||| |||| |||||||||||| | || || |||||| | | Sbjct 1312 GCCGTCTCGACCGGGTAGTAGTTGCGGTCGATAACGCGGTTTAGGTTGCGCGTGATTTGC 1371 Query 148761 TTTGTAATTCTGCGCAGCAATTCA------AAATCGTACTTGTCATCTACGATGCATCGG 148814 ||||| | || || | | || ||| ||| ||| | ||| | | || Sbjct 1372 TTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCGCGCTTCTCAACGTCGACGAAGCGC 1431 Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || ||||| ||||| || |||||||| |||||||| | ||| | ||||||| || Sbjct 1432 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 1491 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 || || | ||| || || ||| |||||| ||| | ||||| || || ||||||| Sbjct 1492 ATTTCCGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTG 1551 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG 148994 ||||| ||||||||||| || ||| |||| || || || || | ||||| || | ||| Sbjct 1552 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATG 1611 Query 148995 --AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATA 149052 || | | || ||||| || | | || || ||| ||||| |||||| Sbjct 1612 GCAAACCA--CACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGC 1669 Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCG 149112 || |||||||| ||| |||| || ||||||||| |||||| |||||| ||| || Sbjct 1670 GCTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCG 1729 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCC 149172 | ||| |||| |||| || || | ||| ||| ||||||||||||| || | || Sbjct 1730 GATCCATCAGCGTCCACTTTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCC 1789 Query 149173 AGAGCGCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 | |||||||| | |||||||| |||| || ||| || ||| ||||||| ||| Sbjct 1790 ACAGCGCGTAGAAGAGGTCGCGGGCGCGCTG--GTCATCCTTTCCCGTGTTGCGTTTCAG 1847 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 || | || || ||||| || ||||| ||||| | || || |||| |||||||| Sbjct 1848 CAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTT 1907 Query 149291 GCGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||||| |||||||||||| |||| ||| | ||||||| || || || | ||| || Sbjct 1908 GCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGG 1967 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTT 149406 | | || | | |||||||| || |||| ||| ||||| || || | | Sbjct 1968 CACGAGCCCGTTCGACGTGCCGTTGGTGCCAGCT-ATGTAGCTGCCAGCAGCGCGGATAT 2026 Query 149407 TGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTG-AGATGGCCGCGCAGTCGCCGAGC 149465 ||||||||| | || ||||||||| | | ||||| ||| | || || || |||| Sbjct 2027 TGTGCACGTGCAGACCAATGCCGCCGGC-TGCTTTGCTGATCACGGCACACTCCTTGAGC 2085 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || ||||||||| ||||||||||| |||| | || ||| |||||||||| |||| Sbjct 2086 GTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCTCATT 2145 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585 ||||| | |||||||| || | ||| ||| ||||||| || || | || Sbjct 2146 TGCGGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTT 2205 Query 149586 CTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 ||| | || |||| ||| |||| | || || ||| || ||||| | ||| Sbjct 2206 GACATGAGGTCATACGTCTCACGCACATTCTTCAGATCTGTGCCGTGAATGCCAAGAGCG 2265 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTCC 149675 || ||||| | ||| ||||| || |||||| Sbjct 2266 ACACGCATGAACATCTGCTGTGGACGCTCC 2295 >seq157 Length=1104 Score = 224 bits (248), Expect = 1e-53 Identities = 565/840 (67%), Gaps = 48/840 (6%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||| || || |||||||| ||||| || ||||||| || ||| || | | Sbjct 118 CTGGTACTCACCCACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 177 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || |||||||| | ||| ||| ||| ||| || ||| | | ||| ||||| Sbjct 178 CATGAAGTCGAACGGCTGCGTCGAGTTGTAGTGCTTCTCCTCGCCGAGCGATACAAGCAG 237 Query 120471 TCGGTCCGCTACAAACTCAATGTACT-CGCACATGGACTGCGCGTTCATGCCCAGCAACG 120529 |||||||| || ||||| ||||||| ||| |||| || ||||||||||| | || | Sbjct 238 CCGGTCCGCGACGAACTCGATGTACTGCGC-CATGAGCTCTGCGTTCATGCCAATCAGCC 296 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 |||||||| ||| || ||||| ||| |||| |||||| ||| | || Sbjct 297 GCACCGGCAGCGCGTCACAGATGAACTCTCGCTCGATGTTCACCGCATCCACAATGATCT 356 Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAA 120649 | |||| | || |||| ||||| | |||| ||| ||| |||||| || | Sbjct 357 CCAGCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGA 416 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||||||||| || |||||||||||||| || ||||||||||| |||||||| || |||| Sbjct 417 AGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCA 476 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCC-GAAAAGAACACGCCC 120768 | | || | |||| | |||| | || ||| | | ||| |||||||| | ||| Sbjct 477 TCAGACCGCGCTTCTTCAGCCAGAACAGCGC-GCAGAACGACCCGGAAAAGAAAATGCCT 535 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCAC 120828 ||||| || ||| | | || ||||| || |||| |||| |||||||| Sbjct 536 TCCACCGCAGCGAAGCCTATCAGCCGCTCCTGAAAGCTCGC---GCTGCTCCCGATCCAC 592 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888 || ||||||||| ||||| | | | |||||| ||| || | ||||| ||||||| Sbjct 593 CGCACGGCCCACTCCGCCTTCCTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGC 652 Query 120889 ATGTCGC-GCTCGCCCTCCTCCGCAATCAGCTGATGGATG--------AGCAGATTGTAC 120939 ||| ||| ||||| ||| || | ||||| | | |||| | |||| Sbjct 653 ----CGCAGCT---TCTCCT-CGCTGTCCG-TGATGTACGTGTCCAGCAGCACAGAGTAC 703 Query 120940 ATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGG---TTGTAAAAGTACTGCGCCTCC 120996 | |||| ||| | | ||| |||| || ||||| ||| || ||||||| Sbjct 704 GTCTCCGAGTGGATGTTCTCCATCATCA---GCTGGAACCCGTAGAACGCGCGCGCCTCT 760 Query 120997 AGCTCGGGCACCGCCCGCTGCATGTACTCGATAAGGTTAATATTC------ACGATACTG 121050 || | ||| |||| |||| | || | | || |||| || || | | Sbjct 761 GGCACCTTCAC--ATCGCT-CATG-AAGCGCT--GCGCAAGATTCTCGACGACTATGCCG 814 Query 121051 TCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGC 121110 ||| | |||||||||| || |||||||||||||| ||||| ||||| |||| | ||| Sbjct 815 TCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 874 Query 121111 TTGTGCGCAAAAT-CGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCACATGCA 121169 ||| | | | |||| ||| ||| |||||||| |||||||||| |||| ||||| Sbjct 875 ---GCCGCCCAGTCCTTCAT-GTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCA 930 >seq1037 Length=20842 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || |||| ||||| ||||||||||| Sbjct 17100 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 17159 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 17160 GCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 17219 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||||| | |||||||| || | | || || ||||||||||| || Sbjct 17220 ACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTC 17279 Query 133644 TTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 17280 TTCACGAAGATCTGCATGG 17298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483404925669480