Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1681 315 7e-81 seq157 113 4e-20 >seq1681 Length=36401 Score = 315 bits (348), Expect = 7e-81 Identities = 605/870 (70%), Gaps = 29/870 (3%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCACGATTTC 147518 ||||| || || || ||||| || |||||||| | ||||| || |||||| || ||||| Sbjct 1438 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATTTC 1496 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||| ||||| ||| || || || | ||| | ||| || || | ||||| Sbjct 1497 CGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCA 1556 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||||| ||| |||| ||| |||| || || ||||||| |||| || | ||| ||| Sbjct 1557 TGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAA 1616 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 || || ||||| || | | | || | || |||||||||| ||||| |||| Sbjct 1617 CCA---CACCTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCT 1672 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||| | |||||||||||| || || ||||||||| || || || ||| | |||| Sbjct 1673 CGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGAT 1732 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 |||||||| |||| | | || || || || | |||||||||||| || | ||||| Sbjct 1733 CCATCAGCGTCCACTTTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACA 1792 Query 147815 GCGCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT 147872 ||||||| | || |||| |||| || || || ||| |||||||||||| Sbjct 1793 GCGCGTAGAAGAGGTCGCGGGCGCGCTG--GTCATCCTTTCCCGTGTTGCGTTTCAGCAG 1850 Query 147873 AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG 147932 || | || | |||||||||| |||||||| || | |||||||| | || || || || Sbjct 1851 CAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCG 1910 Query 147933 CTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTC 147989 ||| ||||||||||| || | ||| | ||||||| || ||||| | ||| || | Sbjct 1911 CTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCAC 1970 Query 147990 CAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTG 148049 || ||| ||| |||||||||||| | || | |||||| || || | | ||| Sbjct 1971 GAGCCCGTTCGACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTG 2030 Query 148050 CACGTTAACGCCAATGCCGCCGCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAATGTCG 148108 ||||| | |||||||||||| | | ||||| | || | || || || | || Sbjct 2031 CACGTGCAGACCAATGCCGCCGGC-TGCTTTGCTGATCACGGCACACTCCTTGAGCGTGT 2089 Query 148109 TGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167 ||||||||||||||||||||| | || |||||| | || || ||||| | ||||||| Sbjct 2090 CGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTTGC 2148 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGAC 148225 || | | || || || || ||||| || | ||||| || || || ||||| Sbjct 2149 GGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTTGA- 2207 Query 148226 TCATCATGCGATACGTCTCA-ATAGCGTCTTC-GATGTCGTCGCCGTGAATGCCCAGCGC 148283 ||| | | |||||||||| | ||||| ||| | || |||||||||||| || || Sbjct 2208 -CATGAGGTCATACGTCTCACGCACATTCTTCAGATCT-GT-GCCGTGAATGCCAAGAGC 2264 Query 148284 GACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 ||| ||||||| ||| |||||||| || || Sbjct 2265 GACACGCATGAACATCTGCTGTGGACGCTC 2294 >seq157 Length=1104 Score = 113 bits (124), Expect = 4e-20 Identities = 326/486 (67%), Gaps = 17/486 (3%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCG-AGCGCAT 46834 ||||| |||||||| || |||||||| |||| | ||| | ||| | | |||| | Sbjct 612 AAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGC---AGCGCGA-GCTTTCAGGAGCGGCT 557 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttC-GGGCAGTTTTGCCGCCATTTTTT 46893 | | | ||||| || |||||| | || ||||| ||| ||| ||| || | || | Sbjct 556 GATAGGCTTCGCTGCGGTGGAAGGCATTTTCTTTTCCGGGTCGTTCTGC-GCGCTGTTCT 498 Query 46894 ACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCG 46953 | || | || | |||||||| ||||||||||| |||||| | |||||||||| Sbjct 497 GGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCG 438 Query 46954 ACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA- 47012 |||| || |||||||||||||| || || || ||||| ||| | | || | ||| Sbjct 437 ACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAAC 378 Query 47013 TTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTT 47072 | | || | || | ||| || || ||| ||||||| |||||| ||||| Sbjct 377 TGCCGCGCGAGCGCG-TGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGAGAGTTC 319 Query 47073 TTTACTGCGGCGCTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AAT 47130 | || |||||||| || || | || | |||||||||||| || ||| ||| | | Sbjct 318 ATCTGTGACGCGCTGCCGGTGCGGC-TGATTGGCATGAACGCAGAGCTCATG-GCGCAGT 261 Query 47131 ATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATG 47190 | || ||||| || ||||| || ||| | || |||||| | ||| | | || Sbjct 260 ACATCGAGTTCGTCGCGGACCGGCTGCTTGTATCGCTCGGCGAGGAGAAGCACTACAA-- 203 Query 47191 CTCG--TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTT 47248 |||| | ||||| || || ||| | | || ||||| ||||||| || || || || Sbjct 202 CTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 143 Query 47249 CGAGAA 47254 ||||| Sbjct 142 TGAGAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595549279720