Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq157 239 6e-57 seq1681 185 1e-40 seq1556 109 8e-18 seq2382 89.7 7e-12 >seq157 Length=1104 Score = 239 bits (264), Expect = 6e-57 Identities = 414/595 (70%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| ||||| ||||| |||| ||||| Sbjct 1020 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 961 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 960 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCT 902 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||| | |||||| ||||| ||||| || ||||||||||| Sbjct 901 GGGCAACGACATGAAGGACTGGGCGGCGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 842 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || ||||| || ||||| |||||| ||||| || | |||||| || || |||| Sbjct 841 CGTGCTTGCCTTCTT-CGCCGGCAGCGACGGCATAGTCGTCGAGAATCTTGCGCAGCGCT 783 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||||||||| || ||| |||||||||||| | || | Sbjct 782 TCATGAGCGATGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 723 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | ||| | ||||| ||| ||| |||| | | Sbjct 722 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGCGAGG 663 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| || | ||| | |||| | || ||||| || | Sbjct 662 AGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAGGAAGGCGGAGT 603 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| || ||||||| |||| | ||| |||| |||||||| | ||||| Sbjct 602 GGGCCGTGCGGTGGATC----GGGAGCAGCGCGA-GCTTTCAGGAGCGGCTGATAGGCTT 548 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 || || || || ||||| || || || || |||||||| | || ||||| ||||| Sbjct 547 CGCTGCGGTGGAAGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAA 488 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||| || ||||| || || | || |||||||| | ||| |||||||| Sbjct 487 GCGCGGTCTGATGCCGGGGCTGACG-TTCAGCAACGAGCTCATCTCGCGCGACGA 434 Score = 140 bits (154), Expect = 5e-27 Identities = 186/253 (74%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 ||||||| || || || || | |||||| |||||| || | || ||||||||||| Sbjct 356 AGATCATTGTGGATGCGGTGAACATCGAGCGAGAGTTCATCTGTGACGCGCTGCCGGTGC 297 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| || ||||||||||| | ||||||| |||||||| || || ||||| ||||| Sbjct 296 GGCTGATTGGCATGAACGC-AGAGCTCATGGCGCAGTACATCGAGTTC-GTCGCGGACCG 239 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||| | |||||||| | ||||||||||||| || | | |||||| | | Sbjct 238 GCTGCTTGTATCGCTCGGC-GAGGAGAAGCACTACAACTCGACGCAGCCGTTCGACTTCA 180 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG-CGCCGCGTGGCGAGTACG 1456759 ||||| |||||||||| |||||||||| ||||| || ||| | | || |||||| Sbjct 179 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTGGGTGAGTACC 120 Query 1456760 CCAAGGCCGGCGT 1456772 ||||||||||| Sbjct 119 AGAAGGCCGGCGT 107 >seq1681 Length=36401 Score = 185 bits (204), Expect = 1e-40 Identities = 281/396 (71%), Gaps = 17/396 (4%) Strand=Plus/Minus Query 259791 TCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCG 259850 |||| ||||| || ||| | ||| ||||||||||||| |||||| ||| Sbjct 2299 TCGTGGAGCGTCCACAGCAGATGTTCATGCGTGTCGCTCTTGGC-ATTC----------- 2252 Query 259851 ACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGT 259910 ||| | ||| | ||| || | |||| | || || || |||||| || || | Sbjct 2251 ACGGC-ACA--GATCTGAAGAATGTGCGTGAGACGTATGACCTCATGTCAAAGGGCTTCT 2195 Query 259911 TCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG-TCG 259969 ||||| || || || || |||||||| |||||||| || ||||| ||| | ||| Sbjct 2194 TCACCCACGCCACCCCGACCCTCTTTAACGCCGGCACCCCAAAGCCGCA-AATGAGCTCG 2136 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| ||| ||||| || ||||| |||||||| |||||||||||| || Sbjct 2135 TGCTTCCTGGTGGCGTCGAAGGAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAG 2076 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 || || | ||| ||| || ||||||||||| ||| | || ||||| | ||||| Sbjct 2075 TGTGCCGTGATCAGCAAAGCAGCCGGCGGCATTGGTCTGCACGTGCACAATATCCGCGCT 2016 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 || ||| |||| | || |||||||||||| ||| ||||| || ||||| ||||| ||| Sbjct 2015 GCTGGCAGCTACATAGCTGGCACCAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGC 1956 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || || ||| |||| || |||||||| |||||| || Sbjct 1955 GTCTTCAACAACACCGCCCGCTACGTGGACCAGGGC 1920 Score = 93.3 bits (102), Expect = 6e-13 Identities = 365/562 (65%), Gaps = 18/562 (3%) Strand=Plus/Minus Query 262852 GATCCCAAGGCCCATGAAAGCGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA 262911 || ||| |||||| | ||||| ||||||||||||| | || || | ||| Sbjct 1068 GAACCCGCGGCCCA--ACAGCGGTCGCTGGGACTGGGCCAGCCTCAAGGAGAAGGTGATG 1011 Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||| |||||||||||||| |||| || || | |||||| || || | || |||||| Sbjct 1010 CAGGTGGGCCTGCGCAACTCACTGCTGGTTGCCCCCATGCCAACCGCGTCTACCTCGCAG 951 Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031 || || ||||||| |||| |||||| | |||| ||||||||| ||||| ||| Sbjct 950 ATTCTCGGCAACAACGAGTGCTTCGAGCCCTTCACCTCAAACATCTACGTCCGCCGTGTG 891 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGC 263091 || ||||| || | || || ||| |||| |||| | | | | ||||| || Sbjct 890 CTGAGCGGCGAGTTCCCTGTTGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGT 831 Query 263092 CTGTGG-ACG-CCCGACTTTCGCGACCGGCTCAT-TGCGGCACAGGGCTCGGTGCAGGGC 263148 || ||| ||| ||| | || || | |||| | | || | ||||| | | Sbjct 830 CTATGGAACGAGTCGA--TGCGGAACGAGATCATCTCCTACA-ACGGCTCTATCCTCACT 774 Query 263149 TTTGACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTG 263208 || ||| | | ||| ||| || | | || | | ||||||||||||| | Sbjct 773 ATTAACGGC------ATCCCGGACGACCTGAGAGAGCTTTACCGGACCGTGTGGGAGATT 720 Query 263209 CCCAACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAG 263268 || | || | || || ||||| |||||||| | || | |||||| ||| Sbjct 719 CCGCAGCGCAAGCTGATAGACATGGCACGCGACCGCGGCCAGTACATTGACCAGTCGCAG 660 Query 263269 TCGCTCAACCTGTACCTCGCCGA-CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTA 263327 ||| | ||||| | |||| | || ||| || ||| |||||||| |||| | ||| Sbjct 659 TCGTTGAACCTCTTCCTC-CAGAGCCCCACCTCCGGTCAGATCACGTCCATGCTCTTCTA 601 Query 263328 -TGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCA 263386 ||| || | | || || ||||| ||| | ||||| |||||| || | |||| || Sbjct 600 TTGCTGGGAGGC-TGGACTGAAGACAGGCCTCTACTACCTGCGCTCCAAGGCCGCGGCGG 542 Query 263387 ACGCCATTCAATTCACCGTCGA 263408 |||| || | |||||||| || Sbjct 541 ACGCGATCAAGTTCACCGTGGA 520 >seq1556 Length=11391 Score = 109 bits (120), Expect = 8e-18 Identities = 308/465 (66%), Gaps = 15/465 (3%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| |||| || | || ||| | ||| |||||||||| || |||| Sbjct 7122 CTCCATCTCGCCAAACCGCAGTCCACCCTCGTGCGCGCGGCCCTCGGTGGG----TTGGC 7067 Query 1600318 G----AGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGC 1600373 | ||| ||| | || ||||| || || ||||| |||||||| | | ||| Sbjct 7066 GCACCAGCGGCTGCAGAGGCCCGCGGGGGCGTGCGTGGATCTTGTCACCAGATAAGTGCT 7007 Query 1600374 GCAGGGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTG 1600432 |||| |||||| || || |||| | |||||||| |||| ||| |||||| Sbjct 7006 TCAGGCGCTGGTAAAAGGTGGG-GCCGAAGAAGATCAAATGGTCCAGCGGCAGACCGGTG 6948 Query 1600433 TGCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGGCGAGCCAACTCGGCG 1600492 ||| | |||||| ||| |||||||| |||| | | | || | |||| | | Sbjct 6947 TGCCCATTGTAGAGGCACTCGTTGCCGTACCGCTGCGACCGGAGGGCATGCAACGCCTTG 6888 Query 1600493 GCGACATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGG 1600552 | | ||||| ||| ||| || || ||||| ||| || | ||||| | | Sbjct 6887 CCAAAGTCGTCCACGACAACGGAGCAGAACGGCGTTGCGTACACCTCGCCGCCCTTGTAG 6828 Query 1600553 CAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATG 1600612 || ||||||||||| ||| | || |||| | | ||| |||||||| || || ||| Sbjct 6827 CACGCCACCTTGCCGGCGAGCGTTTCGATCAGGTGGGCCACCGTCATGCGGGAGGGAATG 6768 Query 1600613 GCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCC 1600672 ||||| |||||||| | | ||| ||| | ||| |||| | || ||||||||||| Sbjct 6767 GCGTGGGGGTTGATGATGAGGTCCGGCACGATGCCGTCGCG-GTTGA--AGGGCATGTCC 6711 Query 1600673 TCGGTGGAG-CGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCG 1600716 || ||| | | | |||| |||||||||||| |||||||| Sbjct 6710 TC-CTGGCGAAACTGGATGCCGTTGGTGCCCTTTTGTCCGTGGCG 6667 >seq2382 Length=24834 Score = 89.7 bits (98), Expect = 7e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 1818082 TCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCAA 1818141 |||| ||||| || ||||| |||||| || ||| | | || ||||| || || || | Sbjct 18182 TCACCCGCTCCGGGAAGGTCAGCGTCATGGCGACCGAGAACGGTACGCCGACTTCATCGA 18241 Query 1818142 TGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCA 1818201 || || | |||||| | ||||||| | || || | ||||| || |||||||||| Sbjct 18242 CATCGATGTTTGGGTCGCCGGTGATGACCGTACGGGCCGAAAAGTCTACACGCTTGCCCA 18301 Query 1818202 TGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 | | |||||||| | || ||| | ||| ||||| | ||||||| Sbjct 18302 TCAAGTTGCCGCGCAGCCGGCCGTACTTCCCCTTCAGCCGCTCC 18345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177557821021574