Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1681 116 4e-21 seq1037 104 2e-17 >seq1681 Length=36401 Score = 116 bits (128), Expect = 4e-21 Identities = 257/382 (67%), Gaps = 5/382 (1%) Strand=Plus/Minus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 || ||||||||||||||||| ||| ||||||| || || ||| || |||| Sbjct 2114 GAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTGTGCCGTGATCAGCAAAGCA 2055 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || |||||| |||| || | | ||||| || ||| ||| | | Sbjct 2054 GCCGGCGGCATTGGTCTGCACGTGCACAATATCCGCGCTGCTGGCAGCTACATAGCTGGC 1995 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 |||||||| | | | ||| | | ||| ||| | ||||| ||||| ||| | | || Sbjct 1994 ACCAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGC 1935 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| ||||| ||| ||||| | ||||| ||| Sbjct 1934 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCTCGAGCCCTGG 1875 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 || || ||||| | | | || ||| ||||||| ||| || || |||| Sbjct 1874 CATGCCGACATCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAGGATGACCAGC-G 1816 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTT 8090 || ||||| || |||| || ||||| | || ||||||||||||||||| || | Sbjct 1815 CGCCCGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAG 1756 Query 8091 CGACGCACAATGGTCGCTCATG 8112 ||| | | | ||| |||| ||| Sbjct 1755 CGAGGGAAAGTGGACGCTGATG 1734 >seq1037 Length=20842 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| |||||||| ||||| || |||||||||| || || | ||| | Sbjct 17079 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGACAGC-GTGCG 17137 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 17138 GCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 17197 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | |||||| || ||||| || || | Sbjct 17198 CTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGC 17257 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 17258 GATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 17296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505381803980040