Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1681 100 2e-16 >seq1681 Length=36401 Score = 100 bits (110), Expect = 2e-16 Identities = 233/351 (66%), Gaps = 3/351 (1%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || ||| ||||||||| ||| || | ||| | |||||| || || || | || | Sbjct 1762 ACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGG 1821 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || || | ||| | | ||||| | |||| | || ||||| ||||||||||| Sbjct 1822 TCATCCTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGC 1881 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACC 131824 || | ||| || || | ||||| ||||||||| ||||| || | || | || | Sbjct 1882 TCGAGATAGACGGCGAAAGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCG 1941 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 |||||||| | ||||| | ||| ||| | | ||||| | | || ||||||| Sbjct 1942 GTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTGGTGCCAGCT 2001 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTA 131944 |||||||||||| || | ||| ||||| |||| || ||||| || ||| | ||| Sbjct 2002 ATGTAGCTGCCAGCAGCGCGGATATTGTGCACGTGCAGACCAATGCCGCCGGCTGCTTTG 2061 Query 131945 GAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCC 131995 ||| | || || | | || |||| ||||| || || | ||||||| Sbjct 2062 CTGATCACGGCACACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCC 2112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424920795061224