Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1681 161 1e-34 seq1636 86.0 8e-12 seq2040 82.4 1e-10 seq1471 82.4 1e-10 seq236 82.4 1e-10 >seq1681 Length=36401 Score = 161 bits (178), Expect = 1e-34 Identities = 564/865 (65%), Gaps = 19/865 (2%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || |||||||| | | |||||||| | | Sbjct 1432 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 1491 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| || |||| ||| || | ||| ||||| || | |||||| ||||| ||| || Sbjct 1492 ATTTCCGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTG 1551 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| || ||||||||||| ||| | ||| ||||||||| |||| || | ||| || Sbjct 1552 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATG 1611 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || | | | | |||| || | ||| ||| || ||||| | |||||| Sbjct 1612 GCAAACCACACCTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 1667 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 111524 |||||| |||||||||||| ||| || ||| |||||| || | ||| Sbjct 1668 GCGCTCGTAGAGCCGCTCAAACTCCTCA-CCATAGCAATCGCTGAGACCCGGGCACGTGT 1726 Query 111525 CTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 ||| | || | ||| || || | | || || ||| |||| || || ||||| Sbjct 1727 TCGGATCCATCAGCGTCCACTTTCCCTCGCTTTTC-ACACGCCTCATAAACAGATCTGGG 1785 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 |||||||| | | ||||| || | || || || | || |||| || Sbjct 1786 ATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTC 1845 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | | || || | | ||| || || ||||| ||||| |||||||| |||| || ||| Sbjct 1846 AGCAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCC 1905 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || || || | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 1906 TTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 1965 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCAC 111819 || | | || | || || || || || || || | | || | | Sbjct 1966 GGCACGAGCCCGTTCGACGTGCCGTTGGTGCCAGCTAT-GTAGCTGCCAGCAGCGCGGAT 2024 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAA 111878 || || | ||||| ||||| || || | | ||||| ||| ||||||||| | | Sbjct 2025 ATTGTGCACGTGCAGACCAATGCCGCC-GGCTGCTTTGCTGATCACGGCACACTCCTTGA 2083 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | ||||| |||| ||| ||||||||| || | |||||||| | || Sbjct 2084 GCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCTCA 2143 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 | ||||| |||| || || || || |||||||| || || ||||| |||| | || | Sbjct 2144 TTTGCGGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 2203 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 ||||| ||| || ||||| ||| | | ||| ||||| ||||| | | Sbjct 2204 TTGACATGAGGTCATACGTCTCACGCACATTCTTCAGATCTGTGCCGTGAATGCCAAGAG 2263 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 |||| ||||||||||| | |||||| Sbjct 2264 CGACACGCATGAACATCTGCTGTGG 2288 >seq1636 Length=1907 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 145 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 204 Query 145344 GGTAGGA 145350 ||||||| Sbjct 205 GGTAGGA 211 >seq2040 Length=10447 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 2912 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 2971 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 2972 CAGGTAGGAG 2981 >seq1471 Length=6401 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 4649 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 4708 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 4709 CAGGTAGGAG 4718 >seq236 Length=78273 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 145274 AACTAAAAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGG 145333 || ||| |||| |||||||||| ||| ||||| | ||||| ||||||| | |||||||| Sbjct 51360 AAATAAGCGCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGG 51301 Query 145334 TTCAAATCCAGGTAGGAG 145351 ||| | |||||||||||| Sbjct 51300 TTCGAGTCCAGGTAGGAG 51283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011376999200