Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1681 172 7e-38 seq157 107 2e-18 >seq1681 Length=36401 Score = 172 bits (190), Expect = 7e-38 Identities = 860/1345 (64%), Gaps = 55/1345 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||| | ||||| |||||||| ||||| || | || || | || || Sbjct 904 TAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTAGAC 963 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || |||||||| || | || || ||| || || ||| | | | | ||| Sbjct 964 GCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGCCCACCTGCATCACCTTCTCC 1023 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCC-------CTGCCACATATCAAA 118354 ||||| | ||||||| || || | ||| || || |||||| || || Sbjct 1024 TTGAGGCTGGCCCAGTCCCAGC-GACCGCTGTTGGGCCGCGGGTTCTTCCACATGTCGAA 1082 Query 118355 CTGGAGGATACCTTGGGACGCTGGC---GAT-CCCTCAAATGTCTCATATGGGCCCTCAA 118410 ||| || || || | ||||||| | | |||| || ||||| || |||||||| Sbjct 1083 CTGCAGAATGCCCT----CGCTGGCCGGGCTGCCCTTGAAGGTCTCGTACGGGCCCTCCT 1138 Query 118411 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470 ||| ||||| ||| || ||| | || || || || ||||| || || | Sbjct 1139 CCTTCGCCAGTTCCATCGACGACTCAACCGCAGCAAAGTAAATCGTTTCGAAGATCTCTG 1198 Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 118530 | |||| || ||||| | || |||||| || || | ||| || | |||| Sbjct 1199 CGTTCACCCGCTGCGCCTCCGCCGAGACAAACGGCAGCCGCATGAGAATGAAGGCGTCCG 1258 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 |||| || || || |||||||| || || || | | ||| ||| | || || |||| Sbjct 1259 CGAGCCCCTGCACGCCGAGGCCGATGGGACGGTTGCGCATGTTACTGTGGCGCGCCGTCT 1318 Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 | || || || | || | |||||||| | ||||| || |||| |||||| | Sbjct 1319 CGACCGGGTAGTAGTTGCGGTCGATAACGCGGTTTAGGTTGCGCGTGATTTGCTTTGTCA 1378 Query 118651 ---TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAA 118707 | | |||||| | || | || | ||| |||| | | ||| | || | Sbjct 1379 CGGTGTAGAGAAGCTGGTGGT--TGAACTC-GCGCTTCTCAACGTCGACGAAGCGCGGCA 1435 Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767 | ||||| || || || || ||||| | ||||| | | |||||||| | ||||| Sbjct 1436 GCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATTT 1495 Query 118768 CCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827 ||||||| | ||| || | ||| || ||||| | ||||| || || ||||| |||| | Sbjct 1496 CCGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGC 1555 Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887 | || |||||||| || ||| | ||| ||||||||| | || |||| ||| || || Sbjct 1556 ATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAA 1615 Query 118888 TCCAGACATC---GGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTG 118944 ||| || || ||| |||| | || | | | || ||||| |||||| Sbjct 1616 ACCACACCTCCTGGGC--CTGG-ATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCT 1672 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGC---CTCTGAGAGCCCTGGTGCCTTATCTG 119001 |||||| |||||||| ||| ||| || | |||||| ||| || | | || | Sbjct 1673 CGTAGAGCCGCTCAAACTCCTCA-CCATAGCAATCGCTGAGA-CCCGGGCACGTGTTC-G 1729 Query 119002 GGCAGAAGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 | | || | ||| || || | || || || ||| |||| || || ||||||||| Sbjct 1730 GATCCATCAGCGTCCACTTTCCCTCGCTTTTC-ACACGCCTCATAAACAGATCTGGGATC 1788 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCA 119118 || ||||| ||||||| || || ||| ||| || || | ||| ||| | || Sbjct 1789 CACAGCGCGTAGAAGAGGTCGCG--GGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCA 1846 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 | || |||| | | ||| || || ||||| || || || || || |||| | |||| Sbjct 1847 GCAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCT 1906 Query 119179 TACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTG 119235 | || || || |||||| || || | || ||| ||| || || || ||||||| Sbjct 1907 TGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTG 1966 Query 119236 GAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACT--TATTGGCTCTGAC 119293 | | || || | || ||| || || || || | || | || | || Sbjct 1967 GCACGAGCCCGTTCGACGTGCCGTTGGT--GCCAGCTATGTAGCTGCCAGCAGCGCGGAT 2024 Query 119294 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG-AGATTTGCGCGCACTCCGTGA 119352 || ||| | ||||| |||||| || || | | ||||| ||| || |||||| ||| Sbjct 2025 ATTGTGCACGTGCAGACCAATGCCGCC-GGCTGCTTTGCTGATCACGGCACACTCCTTGA 2083 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCG 119409 | || ||||||| || ||||| ||| |||| || | ||||||| |||| Sbjct 2084 GCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCT-- 2141 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 |||||| ||| | || || || ||||| ||||| || || || |||||| |||| | | Sbjct 2142 -CATTTGCGGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 2200 Query 119470 CTTGGGACATCTTGTCGTAGGTCTC 119494 | | ||||| ||| || ||||| Sbjct 2201 CCTTTGACATGAGGTCATACGTCTC 2225 >seq157 Length=1104 Score = 107 bits (118), Expect = 2e-18 Identities = 350/534 (66%), Gaps = 26/534 (5%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| |||||||| ||||| || | || ||| ||||||| Sbjct 122 TACTCACCCACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATG 181 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTC--CAATCTGTTTGAGGAGAC 129845 || || || || | | | ||||| | |||| ||| | | | | || || | Sbjct 182 AAGTCGAACGGCTGCGTCGAGTTGTAG--TGCTTCTCCTCGCCGAGCGATACAAGCAGCC 239 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | |||| |||| |||| ||||||| | ||| ||| | |||||| || || || Sbjct 240 GGTCCGCGACGAACTCGATGTACTGCGCCATGAGCTCTGCGTTCATGCCAATCAGCCGCA 299 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 || |||||||| |||||||| | ||| |||| ||| || ||| | ||| | Sbjct 300 CCGGCAGCGCGTCACAGATGAACTCTCGCTCGATGTTCACCGCATCCACAATGATCTCCA 359 Query 129966 GAATGGTCTC-CGTGCCAGGT----CT--AT-TGCGCAAAGTCTTGAAGAGTTCCACG-- 130015 | | | ||| || | ||| | || || |||| ||| || | || || | Sbjct 360 GCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCG---AGT--TGTACAG---CAGGCA 411 Query 130016 -GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 || || ||| ||| ||||||||||| || |||||||| || || ||| ||| || Sbjct 412 TGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCC 471 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| ||||| |||||||||| |||||| | ||| || || || || || ||||| || Sbjct 472 CGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAAT 531 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 || ||||| ||||| | | || ||||| || ||| | | | | | Sbjct 532 GCCTTCCACCGCAGCGAAGCCTATCAGCCGCTCCTGAA---AGCTCGCGCTGCTCCCGAT 588 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||| || ||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct 589 CCACCGCACGGCCCACTCCGCCTTCCTCTGGATGCACGGGATCGTCTGTATCGC 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618414892134120