Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1681 150 2e-31 >seq1681 Length=36401 Score = 150 bits (166), Expect = 2e-31 Identities = 678/1055 (64%), Gaps = 21/1055 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||||||||||| || || | || ||||| || ||| | | ||| Sbjct 2288 CCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCACAGATCTGAAGAATGTG 2229 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||| || ||| ||||| | || | |||| ||||| || || |||||||| Sbjct 2228 CGTGAGACGTATGACCTCATGTCAAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 2169 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || |||| || |||||| | |||||||| | || ||||||||| Sbjct 2168 AACGCCGGCACCCCAAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAGGAC 2109 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCT-CAAAGTGGGCTGG 104460 ||| |||| ||||| | || || | ||||||||| ||| ||||| | | || Sbjct 2108 AGCATCGACGGCATCTACGACACGCTCAAGGAGTGTGCCGTGATCAGCAAAGCAGCC-GG 2050 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 || ||||| ||||| | || || | | || | | || || || || | Sbjct 2049 CGGCATTGGTCTGCACGTGCACAATATCCGCGCTGCTGGCAGCTAC-ATAGCTGGCACCA 1991 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 1990 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 1931 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || || || ||||| || |||| |||||||| ||||| ||||| | Sbjct 1930 TGGACCAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCTCGAGCCCTGGCATG 1871 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || ||| | | || || | || | |||| || | || || ||| || Sbjct 1870 CCGACATCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAGGATGACCAGCGCGCCC 1811 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAGAGT 104755 |||| ||||||| ||| || ||||| |||||||| || |||| | | || | | ||| Sbjct 1810 GCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAG- 1752 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 || || ||| | || | ||| ||| | || |||||| |||| | |||||| Sbjct 1751 GGAAAGTGGACGCTGATGGATCCGAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGAG 1692 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGGTGCC 104874 |||||||| || ||| |||||| || || || |||| | |||| | || Sbjct 1691 GAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-CC 1634 Query 104875 AGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 || ||| || |||||| || || ||| |||| || | |||||| || || | Sbjct 1633 AG--GCCCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACGGGGGGGCCGTT 1576 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 ||| || ||||| ||||| || ||| ||| || || |||||| | || |||||| Sbjct 1575 CATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTCGGCACGATCAA 1516 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG-ATGAGACGGCTGTGT 105050 | | || || || || || ||||| | || | || | | | | |||||||| |||| Sbjct 1515 GTGCTCGAACCTATGCACGGAAATTGTCGAGTACAC-GTCGCCGCAGGAGACGGCGGTGT 1457 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGAT 105109 | |||||||| || ||||| || || | || || |||| | | | || | Sbjct 1456 GCAACCTCGCCTCCATCGCGCTGCCGCGCTTCGTCGACGTTGAGA-AGCGCGAGTTCAAC 1398 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | ||| || || || || |||| ||||||||| | ||||| || Sbjct 1397 CACCAGCTTCTCTACACCGTGACAAAGCAAATCACGCGCAACCTAAACCGCGTTATCGAC 1338 Query 105170 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 | || | ||||| || ||||| || || | ||| ||| | ||||||| || || Sbjct 1337 CGCAACTACTACCCGGTCGAGACGGCGCGCCACAGTAACATGCGCAACCGTCCCATCGGC 1278 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 ||||| || ||||| |||||||| | |||||||| Sbjct 1277 CTCGGCGTGCAGGGGCTCGCGGACGCCTTCATTCT 1243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583241647173480