Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1681 269 3e-67 seq2521 89.7 6e-13 seq157 84.2 2e-11 >seq1681 Length=36401 Score = 269 bits (298), Expect = 3e-67 Identities = 536/775 (69%), Gaps = 28/775 (4%) Strand=Plus/Minus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 |||||||| ||||| | || || ||||| || | | ||| ||||||||||| Sbjct 2276 TTCATGCGTGTCGCTCTTGGCATTCACGGCACAGATCTGAAGAATGTGCGTGAGACGTAT 2217 Query 53252 GACTTAATGAGCCAAAAG--TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 ||| | ||| |||| | | ||| || |||||||| || ||||| || ||||| || | Sbjct 2216 GACCTCATGT--CAAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTTAACGCCGGCA 2159 Query 53310 CGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCG 53366 | | || || ||| |||| |||||||||||||| |||||| ||| |||| Sbjct 2158 CCCCAAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAAGGAGGACAGCATCG 2102 Query 53367 ACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCG 53426 ||||||||||||| |||||||||||||||||| ||| ||| | || || || | Sbjct 2101 ACGGCATCTACGACACGCTCAAGGAGTGTGCCGTGATCAGCAAAGCAGCCGGCGGCATTG 2042 Query 53427 GTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTC 53485 || | ||| ||| | || |||| || |||| || || || |||||| | Sbjct 2041 GTCTGCACGTGCAC-AATATCCGCGCTGCTGGCAGCTACATAGCTGGCACCAACGGCA-C 1984 Query 53486 GCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCA 53544 | ||| || ||||||| ||||| ||||||||||||||||| ||||| ||||| |||| Sbjct 1983 GTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACGTGGACCA 1924 Query 53545 GGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604 ||| || || ||||||||||| | |||||| |||| |||||||| ||||| |||||||| Sbjct 1923 GGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCTCGAGCCCTGGCATGCCGACAT 1864 Query 53605 TATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCT 53664 | | ||||| |||| | || ||| | || || |||| ||| ||||| Sbjct 1863 CTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAGGATGACCAGCGCGCCCGCGACCT 1804 Query 53665 GTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG-GAGAAGGACGAGG-- 53720 || ||| || |||||||| || || || || ||| ||| | | ||| ||||| Sbjct 1803 CTTCTAC-GCGCTGTGGATCCCAGATCTGTTTATG----AGGCGTGTGAAAAGCGAGGGA 1749 Query 53721 -AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 ||||| |||||| |||||| |||||| || ||| | | ||| ||||||||| Sbjct 1748 AAGTGGACGCTGATGGATCCGAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGAGGAG 1689 Query 53780 TTTAACGAGATGTATCGGACG-TACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||| | | | || || || |||| ||| | |||||||| | |||| | || ||| Sbjct 1688 TTTGAGCGGCTCTA-CGAGCGCTACG-AGTCCGAGGGCCGCGGCGTCAAGACGATCCAGG 1631 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | ||||| ||| ||| |||||| || ||| | |||||||| ||||| ||| Sbjct 1630 CCCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACGGGGGGGCCGTTCATCC 1571 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||||||||| | |||| ||| ||||||||||| ||||| ||||| Sbjct 1570 TCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTCGGCACGATCAA 1516 Score = 109 bits (120), Expect = 6e-19 Identities = 127/166 (77%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 |||||| |||||||| ||||| || || || |||||||||||||| || | ||||| | Sbjct 1005 GGGCCTGCGCAACTCACTGCTGGTTGCCCCCATGCCAACCGCGTCTACCTCGCAGATTCT 946 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAG 55595 |||||||||||| |||||||| | ||| | ||||||||| | ||||| | | || Sbjct 945 CGGCAACAACGAGTGCTTCGAGCCCTTCACCTCAAACATCTACGTCCGCCGTGTGCTGAG 886 Query 55596 CAGGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCT 55638 | || ||||| ||| || | |||||| ||||||||| |||||| Sbjct 885 C-GGCGAGTTCCCTGT--TG-TGAACAAGTACCTCGTCATGGACCT 844 >seq2521 Length=4698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||| |||| ||||||| ||||||| | || ||| ||||| |||| ||||| || || Sbjct 1664 GGCACGAGCAGGTTGATGTTGTTGCCCCCAGTGAAGTTCTGCGCCATCTTCACGATGGTC 1723 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||||||| | || |||||||| |||||| | ||| | |||||| |||| || | Sbjct 1724 TCCTGCAGCGAGACCTCGCCGTGGTGGAACGCCGACGCCTCTGAGATGTAGCCCGACAGC 1783 Query 152215 TGCGCCACCTTC 152226 |||||||||||| Sbjct 1784 TGCGCCACCTTC 1795 >seq157 Length=1104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 180/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 74996 CTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 |||||| ||| ||| ||| | | |||| | || | |||||||||||||| || || Sbjct 658 CTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGAT 717 Query 75056 CGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT 75115 ||| | | | |||| || ||||||| | |||||||||| | || ||||| | Sbjct 718 GTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACATCGCT 777 Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 || | | | |||||| | ||| |||||||| | ||||||| || || || Sbjct 778 CATGAAGCGCTGCGCAAGATTCTCGACGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAG 837 Query 75176 TACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCC 75235 || ||||| ||||| ||||| |||| | || |||| ||||||| ||| Sbjct 838 CACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGCCGCCCAGTCCTTCATGTCGTT 897 Query 75236 CGCCAAATCAATCTCCTCGACCGTCCAGA 75264 ||| || |||||||| |||||||||| Sbjct 898 GCCCAGGTCGATCTCCTCCACCGTCCAGA 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198030794600