Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1681 228 9e-55 seq1037 149 7e-31 seq157 109 6e-19 seq2521 89.7 6e-13 >seq1681 Length=36401 Score = 228 bits (252), Expect = 9e-55 Identities = 898/1391 (65%), Gaps = 40/1391 (3%) Strand=Plus/Plus Query 80388 GTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGT 80447 ||||| ||| | ||||| || ||||||||| ||||| ||||| | || ||| || Sbjct 909 GTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTAGACGCGGT 968 Query 80448 CGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA 80507 ||||| ||| | |||| |||||| || |||||||| || | | | | ||| | | Sbjct 969 TGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGCCCACCTGCATCACCTTCTC-CTTGA 1027 Query 80508 ATCTGACCAAAAATCAACCCCAACGCTGT--GACC----------CCACATGTCGTGCTG 80555 ||| || | || | | |||||| | || |||||||||| ||| Sbjct 1028 GGCTGGCCCAGTCCCAGCGAC--CGCTGTTGGGCCGCGGGTTCTTCCACATGTCGAACTG 1085 Query 80556 CAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGC 80615 || |||||||| ||||| ||| ||| |||||||||||||||||| ||| || Sbjct 1086 CAGAATGCCCTCGCTGGCCGGGCTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTTCGC 1145 Query 80616 CAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCAC 80675 ||| || |||| | || || || ||||| || |||| | |||||| Sbjct 1146 CAGTTCCATCGACGACTCAACCGCAGCAAAGTAAATCGTTTCGAAGATCTCTGCGTTCAC 1205 Query 80676 ACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734 |||| |||||| | | | |||| || | ||| | ||||| |||| || || | Sbjct 1206 -CCGCTGCGCCTCCGCCGAGACAAACGGCAGCCGCATGAGAATGAAGGCGTCCGCGAGCC 1264 Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATT 80793 |||| ||||||| | |||| || |||| |||| |||| | | || || | || || Sbjct 1265 CCTGCACGCCGAGGCCGATGGGACGGTTGCGCATGTTACTGTGGCGCGCCGTCTCGACC- 1323 Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853 ||||| |||| ||||| |||||||| |||||||| || | | ||| || Sbjct 1324 GGGTAGTAGTTGCGGTCGATAACGCGGTTTAGGTTGCGCGTGATTTGCTTTGTCACGGTG 1383 Query 80854 TGAAGTTTCTGAAAGTCGAATTGG---TTCCC--CTTC-ACAAATGCCGGAAGGCTCAGG 80907 | || ||| || ||| | | ||| | | || || || ||| || | | Sbjct 1384 TAGAGAAGCTGGTGGTTGAACTCGCGCTTCTCAACGTCGACGAAGCGCGGCAGCGCGATG 1443 Query 80908 GACGCCAGATTGCACACGGCCACCTCTT-CAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 || || || |||||||| ||| ||| | | || | || ||||||| ||||||||||| Sbjct 1444 GAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGAC-GTGTACTCGACAATTTCCGTGCA 1502 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | || || |||| || || || || || |||||||| |||||| |||||| ||||| Sbjct 1503 TAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTC 1562 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||||||| ||| |||| || ||||||| ||| |||| ||||||||| ||| | Sbjct 1563 CTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAACCACAC 1622 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 ||| | |||| || | |||| | ||| |||| | | || |||| ||| Sbjct 1623 CTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCG 1682 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | || |||| |||| | || |||| | |||||| ||| || |||||| Sbjct 1683 C-TCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGATCCATCAGCG 1741 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 ||| | ||| | | ||| | |||| || || |||||||| || ||| || Sbjct 1742 TCCACTTTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTAGA 1801 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 | ||||||||| |||| || || | ||| |||| | || | |||||| | | Sbjct 1802 AGAGGTCGCGGGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAA 1861 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCAC 81382 |||||| |||||||| ||||| ||||| ||||||| | |||||||| || ||| | Sbjct 1862 AGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCGCTTACCGCCGC 1921 Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTG 81442 |||||| ||||| ||||| || ||| || || || | ||| || | || || | | Sbjct 1922 CCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCG 1981 Query 81443 ACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGAC 81502 || ||||| || || | || || ||||| | ||| | |||| Sbjct 1982 ACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTGCACGTGCAGAC 2041 Query 81503 CGATGCCACCTGACCACTTTG-AAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 | ||||| || | | ||||| ||| |||||| || | || || || || || Sbjct 2042 CAATGCCGCC-GGCTGCTTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTAGATGCCG 2100 Query 81562 TCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 |||||||| || | ||| | | || || ||| | |||| ||| || || || Sbjct 2101 TCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCT---CATTTGCGGCTTTGGG 2157 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | |||||| || || || || ||||| ||||| |||| | | |||||||| |||||| Sbjct 2158 GTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTTGACATGAGGTCA 2217 Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738 || || || || | ||| |||||||| || | ||| |||||||| ||| Sbjct 2218 TACGTCTCACGCACATTCTTCAGATCTGTGCCGTGAATGCCAAGAGCGACACGCATGAAC 2277 Query 81739 ATGTACTGGGG 81749 || | ||| || Sbjct 2278 ATCTGCTGTGG 2288 >seq1037 Length=20842 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 17296 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 17237 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 17236 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 17177 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || | ||||| || Sbjct 17176 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGTCGGACTACAAC 17117 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 17116 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 17070 >seq157 Length=1104 Score = 109 bits (120), Expect = 6e-19 Identities = 283/427 (66%), Gaps = 17/427 (4%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 |||||||| ||||||||||| ||||| ||||| | | |||||||| || ||||| || Sbjct 540 GTGGAAGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 481 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||| ||||| || |||||||| || ||| Sbjct 480 CTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACG 421 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || || || | || |||| || | ||| ||||| |||||| | | | | Sbjct 420 GACTT--CGCATGCCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCG 363 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTC 64972 | | || || | || || | || || || ||||| || |||||| | Sbjct 362 TGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGAGAGTTCATCTGTGACGCGCTGC 303 Query 64973 CGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAG 65032 || || || || |||||| | || || ||| ||||| ||||| || || || | Sbjct 302 CGGTGCGGCTGATTGGCATGAACGCAGAGCTCATGGCGCAGTACATCGAGTTCGTCGCGG 243 Query 65033 ATCGCCTGCTT-----ACTCAGTTTGGTATTAAGCCCTACTGGAATTCTTCAAATCCATT 65087 | || |||||| ||| | || |||| |||| || || | | || || Sbjct 242 ACCGGCTGCTTGTATCGCTCGGCGAGG--AGAAGCACTAC---AACTCGACGCAGCCGTT 188 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| ||||| |||| ||| || Sbjct 187 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTGGG 128 Query 65148 TGATTAC 65154 ||| ||| Sbjct 127 TGAGTAC 121 >seq2521 Length=4698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 ||||||||||||||||||||||||| | ||||| |||| | ||||||||||||| Sbjct 1795 GAAGGTGGCGCAGCTGTCGGGCTACATCTCAGAGGCGTCGGCGTTCCACCACGGCGAGGT 1736 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| |||| ||||| || || | || |||||||| || | || ||| | || Sbjct 1735 CTCGCTGCAGGAGACCATCGTGAAGATGGCGCAGAACTTCACTGGGGGCAACAACATCAA 1676 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGG 32198 | | |||| |||| || ||||| || Sbjct 1675 CCTGCTCGTGCCAGAGGGTCAGTTCGG 1649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570291672432240