Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2242 141 8e-29 seq1556 102 7e-17 >seq2242 Length=10277 Score = 141 bits (156), Expect = 8e-29 Identities = 384/578 (66%), Gaps = 26/578 (4%) Strand=Plus/Minus Query 29895 GGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 29954 |||||||||| ||||| || ||| |||| |||| ||| || || || || || | | Sbjct 3509 GGTAGACGTGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCT 3450 Query 29955 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 30014 || || | ||||| || | |||| ||||||||| ||||| || ||||| |||| Sbjct 3449 TGGCAATGAGAATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGGGACGCCGAGGCCCA 3390 Query 30015 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-------TCCGTCGCTCACGTAA 30067 |||| | ||| | ||||| ||| || || ||||| ||||| | ||||||| Sbjct 3389 TGTCGCACGAACGTTGGTACAGCATGCAGGATAGCTCGCTCTTCTCCGT-GTTCACGTAG 3331 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 || ||| | ||||||||| || || ||||| | || | |||||||| Sbjct 3330 AATTGAGCGAGCAAGTGGCACGGCGGCAGTGCCATCTTGTGCAGCGCGCACGGGTTCCAC 3271 Query 30128 GC---GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 30184 || | ||| || || || | ||| | ||||| | |||| |||||| | Sbjct 3270 GCAGTGAACAGGA-GA--CGGCGGTCGTTCGGGTTCGCCTTGATCGTCTCCACGATGAAC 3214 Query 30185 TGCAGCTGATCCACCCCCATCCCCGA-GTAGTCTGCCCTCATGTCCGTGTACTCTGCTCC 30243 | | ||| ||||||||| || ||| ||||| || | || ||| ||||| || Sbjct 3213 TTGATCTGGTCCACCCCC-TCGCCGTCGTAGTTCGCTTCGAGCCCCCGGTATTCTGCCCC 3155 Query 30244 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC----TCCCTCTTCCCTGTGCT 30299 ||| || | ||||||||| ||||| || || || ||||| ||| | ||| |||| Sbjct 3154 GAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTCCGTATTCTCTGTC-- 3097 Query 30300 CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCT 30359 ||||| | |||| | ||| || | || |||||| |||||||||| | || ||| Sbjct 3096 --AAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGTATGTCCT 3039 Query 30360 TCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC-CACG 30418 | || | |||| | | |||||| ||| | | ||||||||||| |||||| ||| Sbjct 3038 TGTCCGCGAGCAGCTGCGCGTTTGTCTCCCCGCGCAGGAACCACAGCAACTCCTCGCAC- 2980 Query 30419 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||| | ||| ||||| | ||| ||||| || || || Sbjct 2979 ACGCCTCGCCAGAAGACGCGCTTCGTCGTCAGCAGTGG 2942 >seq1556 Length=11391 Score = 102 bits (112), Expect = 7e-17 Identities = 118/153 (77%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 52760 CCCAGAGATGGGCGACAAGTT-TGCGTCGTTCACGGCGCAAAAGGGGACGTGCGG-AGCC 52817 |||| | || ||||||||||| ||| | ||||| |||||||| || ||| | || Sbjct 6639 CCCAAACATCGGCGACAAGTTCTGCAGCCGCCACGGA-CAAAAGGGCACCAACGGCATCC 6697 Query 52818 -GTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCAT 52876 || | ||||||||||||||||||| || ||||| | ||||| ||||||||||| Sbjct 6698 AGTTTCG--CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCAT 6755 Query 52877 CAACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909 ||||||||||||| |||||||| | ||||| || Sbjct 6756 CAACCCCCACGCCATTCCCTCCCGCATGACGGT 6788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406297391337684