Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2242 206 2e-48 >seq2242 Length=10277 Score = 206 bits (228), Expect = 2e-48 Identities = 447/665 (67%), Gaps = 19/665 (3%) Strand=Plus/Plus Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 ||||| |||||| ||||| ||| ||| | | | |||||| ||||| || | | Sbjct 2863 GAAGGAGGACCGCACCGGCGTGGGCACCTTGAGCCTCTTCGGCGCACAGATGCGGTTCTC 2922 Query 34207 CCTTCGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGT 34263 ||| || | | | | || |||||||||||||| || || | |||| |||||| Sbjct 2923 CCTACGCGACAACCGCCTGCCACTGCTGACGACGAAGCGCGTCTTCTGGCGAGGCGTGTG 2982 Query 34264 CGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGG 34323 ||||||| ||||||||||| || | |||| || ||| | || |||| || | || Sbjct 2983 CGAGGAGTTGCTGTGGTTCCTGCGCGGGGAGACAAACGCGCAGCTGCTCGCGGACAAGGA 3042 Query 34324 GGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC 34383 | | |||||||||| |||| || || || ||||| |||| || || || || Sbjct 3043 CATACACATCTGGGACGGCAACGGCTCGCGCGAGTTTCTCGACAGCCGCGGCTTGACA-- 3100 Query 34384 TCGGGA----GGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | || |||| ||| | ||||| |||||||| ||||||||| | ||||| |||| Sbjct 3101 --GAGAATACGGAGATGGACCTCGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTCGGGG 3158 Query 34440 CGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 | || || |||||| ||||||| |||| || |||| | ||||||| | ||| | Sbjct 3159 CAGAATACCGGGGGCTCGAAGCGAACTACGACGGCGAGGGGGTGGACCAGATCAAGTTCA 3218 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 | | || || | ||| |||||| | ||| | | || || | |||||||||| Sbjct 3219 TCGTGGAGACGATCAAGGCGAACCCGAACGACCGCCGTCTCCTGTTCACTGCGTGGAACC 3278 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-- 34617 || | || | |||||| || || ||||||||| ||| ||||||||||| Sbjct 3279 CGTGCGCGCTGCACAAGATGGCACTGCCGCCGTGCCACTTGCTCGCTCAATTCTACGTGA 3338 Query 34618 ----CGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAG 34673 | ||| | ||||| |||||| ||| || ||||| ||| | |||||||| | | Sbjct 3339 ACACGGAGAAGAGCGAGCTATCCTGCATGCTGTACCAACGTTCGTGCGACATGGGCCTCG 3398 Query 34674 GGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGG 34733 | || || |||||||| || ||||| |||||||| | || || || | || | Sbjct 3399 GCGTCCCCTTCAACATCGCCTCCTACGCGCTGCTCACCATTCTCATTGC-CAAGGCGACG 3457 Query 34734 GGT-TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 ||| || ||||| ||||| ||||| || | || || || || |||||| | |||| Sbjct 3458 GGTCTGCGGCCTGGTGAGCTTGTGCACACCCTCGGCGACGCCCACGTCTACCGCAGCCAC 3517 Query 34793 ATCGA 34797 ||||| Sbjct 3518 ATCGA 3522 Score = 206 bits (228), Expect = 2e-48 Identities = 447/665 (67%), Gaps = 19/665 (3%) Strand=Plus/Minus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 ||||||||| | |||||| || || || || | || ||||| ||||| ||||| | Sbjct 3522 TCGATGTGGCTGCGGTAGACGTGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGC 3463 Query 6608 A-ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 | |||| || | || || || | |||||||| ||||| || |||||||| || Sbjct 3462 AGACCCGTCGCCTTG-GCAATGAGAATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGG 3404 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 || || | |||||||| | ||| ||||| || ||| |||||| ||||| | ||| | Sbjct 3403 GACGCCGAGGCCCATGTCGCACGAACGTTGGTACAGCATGCAGGATAGCTCGCTCTTCTC 3344 Query 6727 G------ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||||||| ||| ||||||||| || || |||||| | || | Sbjct 3343 CGTGTTCACGTAGAATTGAGCGAGCAAGTGGCACGGCGGCAGTGCCATCTTGTGCAGCGC 3284 Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTC 6840 |||||||||||| | || || | | ||| | |||||| ||| | || || Sbjct 3283 GCACGGGTTCCACGCAGTGAACAGGAGACGGCGGTCGTTCGGGTTCGCCTTGATCGTCTC 3224 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATA 6900 | | | ||| | ||||||| | |||| || |||| ||||||| |||||| || Sbjct 3223 CACGATGAACTTGATCTGGTCCACCCCCTCGCCGTCGTAGTTCGCTTCGAGCCCCCGGTA 3164 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC----T 6956 || ||||| ||||| | ||||||||| |||||||| ||||| | ||| |||| | Sbjct 3163 TTCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTCCGTATT 3104 Query 6957 CCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 | | || || || || |||| ||||| || || || |||| |||||||||| | Sbjct 3103 CTC----TGTCAAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTGCCGTCCCAGATGT 3048 Query 7017 TCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCT 7076 | || | || |||| || | ||| || |||| | || ||||||||||| || Sbjct 3047 GTATGTCCTTGTCCGCGAGCAGCTGCGCGTTTGTCTCCCCGCGCAGGAACCACAGCAACT 2988 Query 7077 CCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCC 7133 ||||| |||||| |||| | || || |||||||||||||| || | | | | | Sbjct 2987 CCTCGCACACGCCTCGCCAGAAGACGCGCTTCGTCGTCAGCAGTGGCAGGCGGTTGTCGC 2928 Query 7134 GAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCC 7193 | ||| | | || ||||| |||||| | | | ||| ||| ||||| |||||| Sbjct 2927 GTAGGGAGAACCGCATCTGTGCGCCGAAGAGGCTCAAGGTGCCCACGCCGGTGCGGTCCT 2868 Query 7194 CCTTC 7198 ||||| Sbjct 2867 CCTTC 2863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247680183440