Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1556 109 4e-19 seq2242 102 7e-17 >seq1556 Length=11391 Score = 109 bits (120), Expect = 4e-19 Identities = 119/154 (77%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 53524 CCCAGAGATGGGCGACAAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAGCGG 53582 |||| | || ||||||||||| |||| || ||||| |||||||| || ||| Sbjct 6639 CCCAAACATCGGCGACAAGTTCTGCAGCCGCCACGGA-CAAAAGGGCACCAACGGCA--- 6694 Query 53583 TCCTGACTC---AGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 53639 ||| | || ||||||||||||||||| || ||||| | ||||| |||||||||| Sbjct 6695 TCCAGTTTCGCCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCA 6754 Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 |||||||||||||| |||||||| | |||||||| Sbjct 6755 TCAACCCCCACGCCATTCCCTCCCGCATGACGGT 6788 >seq2242 Length=10277 Score = 102 bits (112), Expect = 7e-17 Identities = 369/577 (64%), Gaps = 24/577 (4%) Strand=Plus/Minus Query 29667 GGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 29726 |||||||||| || || || |||||||| |||| ||| || || || || || | | Sbjct 3509 GGTAGACGTGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCT 3450 Query 29727 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCA 29786 || || | ||||| || | |||| ||||||||| ||||| || ||||| |||| Sbjct 3449 TGGCAATGAGAATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGGGACGCCGAGGCCCA 3390 Query 29787 TGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC-------TCCGTCGCTCACGTAA 29839 |||| | || | ||||| ||| ||| || ||||| ||||| | ||||||| Sbjct 3389 TGTCGCACGAACGTTGGTACAGCATGCAGGATAGCTCGCTCTTCTCCGT-GTTCACGTAG 3331 Query 29840 AACTGACACATGGCA--TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 || ||| | ||| |||||||| || || ||||| || | ||||||| Sbjct 3330 AATTGAGCGA--GCAAGTGGCACGGCGGCAGTGCCATCTTGTGCAGCGCGCACGGGTTCC 3273 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 29957 | ||| | | || || | ||| | ||||| | |||| |||||| | | Sbjct 3272 ACGCAGTGAACAGGAGACGGCGGTCGTTCGGGTTCGCCTTGATCGTCTCCACGATGAACT 3213 Query 29958 GCAGCTGATCCACCCCCATCCCCGA-GTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCG 30016 | ||| ||||||||| || ||| ||||| | || Sbjct 3212 TGATCTGGTCCACCCCC-TCGCCGTCGTAGTTCGCTTCGAGCCCCCGGTATTCTGCCCCG 3154 Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC----TCCCTCTTCCCTGTGCTC 30072 || || | ||||||||| ||||| || || || ||||| ||| | ||| |||| Sbjct 3153 AAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTCCGTATTCTCTGTC--- 3097 Query 30073 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30132 ||||| | |||| | ||| || | || |||||| |||||||||| | || |||| Sbjct 3096 -AAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGTATGTCCTT 3038 Query 30133 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC-CACGA 30191 || | |||| | | |||||| ||| | | ||||||||||| |||||| ||| | Sbjct 3037 GTCCGCGAGCAGCTGCGCGTTTGTCTCCCCGCGCAGGAACCACAGCAACTCCTCGCAC-A 2979 Query 30192 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 || | ||| ||||| | ||| ||||| || || || Sbjct 2978 CGCCTCGCCAGAAGACGCGCTTCGTCGTCAGCAGTGG 2942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406150196050522