Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2242 138 8e-28 seq1556 98.7 7e-16 >seq2242 Length=10277 Score = 138 bits (152), Expect = 8e-28 Identities = 406/613 (66%), Gaps = 26/613 (4%) Strand=Plus/Minus Query 27126 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 27185 ||||||||| | ||| || | || | ||| |||||||||| ||||| || ||||| Sbjct 3544 CTCGAGCTGCGCCTTGAGGGCATCGATGTGGCTGCGGTAGACGTGGGCGTCGCCGAGGGT 3485 Query 27186 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 27245 ||| |||| ||| || || || || || | | || || | ||||| || | Sbjct 3484 GTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCTTGGCAATGAGAATGGTGAGCAGCGC 3425 Query 27246 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 27305 |||| ||||||||| ||||| || ||||| |||||||| | ||| | ||||| ||| Sbjct 3424 GTAGGAGGCGATGTTGAAGGGGACGCCGAGGCCCATGTCGCACGAACGTTGGTACAGCAT 3365 Query 27306 ACACGAGAGCTCTC-CATCGC-----TTACGTAAAACTGACATATGGCGTGGCACGGAGG 27359 || || ||||| | | || | | ||||| || ||| | ||||||||| || Sbjct 3364 GCAGGATAGCTCGCTCTTCTCCGTGTTCACGTAGAATTGAGCGAGCAAGTGGCACGGCGG 3305 Query 27360 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC---GCACACGATGATGCGCCTGTC 27416 || ||||| | || | |||||||| || | ||| || || || | ||| Sbjct 3304 CAGTGCCATCTTGTGCAGCGCGCACGGGTTCCACGCAGTGAACAGGA-GA--CGGCGGTC 3248 Query 27417 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 27476 | ||||| | |||| |||||| | | | ||| ||||||||| || ||| Sbjct 3247 GTTCGGGTTCGCCTTGATCGTCTCCACGATGAACTTGATCTGGTCCACCCCC-TCGCCGT 3189 Query 27477 -GTAGTCTACCCTCATGTCCGTG-TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTAC 27534 ||||| | | || | || | || ||||| ||||| || | ||| ||||| ||||| Sbjct 3188 CGTAGT-TCGCTTCGAGCCCCCGGTATTCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAG 3130 Query 27535 ACCGGTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTC 27590 || || || ||||| ||| | ||| |||| ||||| | |||| | ||| || Sbjct 3129 ACAGGGCCGAGGTCCATCTCCGTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTC 3074 Query 27591 TCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT 27650 | || |||||| |||||||||| | || |||| || | |||| | | |||||| Sbjct 3073 GCGCGAGCCGTTGCCGTCCCAGATGTGTATGTCCTTGTCCGCGAGCAGCTGCGCGTTTGT 3014 Query 27651 GGACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGG 27709 ||| | | ||||||||||| |||||| ||| ||| | ||| ||||| | ||| | Sbjct 3013 CTCCCCGCGCAGGAACCACAGCAACTCCTCGCAC-ACGCCTCGCCAGAAGACGCGCTTCG 2955 Query 27710 TCGTGAGGAGGGG 27722 |||| || || || Sbjct 2954 TCGTCAGCAGTGG 2942 >seq1556 Length=11391 Score = 98.7 bits (108), Expect = 7e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 48606 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 48665 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 6705 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 6764 Query 48666 CGCCTTTCCCTCCAGGATGACCGT 48689 |||| |||||||| | ||||| || Sbjct 6765 CGCCATTCCCTCCCGCATGACGGT 6788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369495369649637