Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1037 170 4e-37 seq1010 95.1 3e-14 seq2521 89.7 1e-12 >seq1037 Length=20842 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| | Sbjct 17070 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAC 17129 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||||||||||| || || ||||| ||| Sbjct 17130 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 17189 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| | || || Sbjct 17190 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 17249 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 17250 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 17296 >seq1010 Length=18280 Score = 95.1 bits (104), Expect = 3e-14 Identities = 227/340 (67%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||| ||||| | | | ||| |||||||||||||| ||||| | || ||| ||||| Sbjct 11185 GTGAAGATGTAGCGGCCCGCCGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTGG 11244 Query 273840 CCCTC---GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 || || | | || ||| | ||||||||| || || | ||||| ||||| Sbjct 11245 CCATCCTTGCGGAGCAGCGGA---ACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCCG 11301 Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956 ||||| ||| ||| || |||||||||||| |||||| ||| || | || || Sbjct 11302 ACGATCGTCTGGACAAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGAGACGTAG 11361 Query 273957 CCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAAC 274016 || | ||| | ||||| | | || |||||| |||||||| ||| ||| Sbjct 11362 CCGGCAAGCTGCACGACCTTGATGGAGTTCACCAAGTTGCGCTTGAAGCAGGAGAACAGG 11421 Query 274017 ACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATCA 274076 | ||| ||||| ||| ||||| || |||| || || || ||||| || | || Sbjct 11422 ATCTTGCGCTGGCCGGGTTTGAAGCCGTCAATCACGCTCGGGATGCTGCGCTCGCAGTC- 11480 Query 274077 TACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 ||| ||||| | |||||| |||||||| | ||||| Sbjct 11481 -GGCGATGGAGAAGAGAATCAGCTCCTTGTCCACAAAGTC 11519 >seq2521 Length=4698 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCT---GGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAA 273830 || ||||| |||||||| | |||| || ||||| |||| ||| | | || Sbjct 1592 AGCTTCGTAAAAATGTAGCGCGGGGCA---GCGTGGTCGCTGCCGAGCTGCTGTCGAGAG 1648 Query 273831 CCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890 || ||||||||||| |||| ||| ||| |||||||||| || | | | ||| ||| Sbjct 1649 CCGAACTGACCCTCTGGCACGAGCAGGTTGATGTTGTTGCCCCCAGTGAAGTTCTGCGCC 1708 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTG 273931 || |||||||| ||| |||| || || |||||||||||||| Sbjct 1709 ATCTTCACGATGGTCTCCTGCAGCGAGACCTCGCCGTGGTG 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046703968394058