Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq15 116 8e-21 seq20 105 1e-17 seq16 84.2 5e-11 >seq15 Length=568429 Score = 116 bits (128), Expect = 8e-21 Identities = 292/441 (66%), Gaps = 7/441 (2%) Strand=Plus/Minus Query 230203 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 230262 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 410559 GTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 410500 Query 230263 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATC 230320 ||||||| || || || || | |||||| ||||| |||||||||||||| || Sbjct 410499 CTGATGCCAGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGTCTACACA 410442 Query 230321 AACAGTTCGGCGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAGACGG 230377 | |||| || |||| || | || || ||||||| || |||| | Sbjct 410441 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 410382 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | | || || || || || | | ||| |||||||| || ||||| | | Sbjct 410381 TGCTGGAGATTATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 410322 Query 230438 CATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCG 230497 | || || |||||||||||||| || || |||| ||||||||||| ||||| || | Sbjct 410321 CGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTACATCGAGTTCGTCGCGG 410262 Query 230498 ACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCAT 230557 |||| | | || | || || | ||||| ||| |||| | | | || || | || Sbjct 410261 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGAAT 410202 Query 230558 TTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACT 230617 | |||||| | || ||||| || || || || ||||||||||| | | || | || | Sbjct 410201 TCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAGGAAGGTGGGGGAGT 410142 Query 230618 ATCAGAGGCCTGGTGTGATGA 230638 | |||| | |||| ||||||| Sbjct 410141 ACCAGAAGGCTGGCGTGATGA 410121 >seq20 Length=1057807 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || |||||||||||||| || || |||| Sbjct 880310 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 880251 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | | || | || || | ||||| ||| Sbjct 880250 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 880191 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 |||| | | | || || | || |||||| | || || || || || || || |||||| Sbjct 880190 CACTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCTCTGCAGGGCAAAACGAACTTC 880131 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| | || | || || |||| | | || ||||||| Sbjct 880130 TTCGAGAAGAGGGTGGGGGAGTACCAGAAGGCCGGCGTGATGA 880088 >seq16 Length=772477 Score = 84.2 bits (92), Expect = 5e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 165715 TCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||| |||||||||| | ||||||| || ||||||||||||||||||||||| Sbjct 228738 TCTAGCTCAGTTGGTAGAGCGCGTGGCTTTTAACCTCGTGGTCGTGGGTTCGAGCCCCAC 228797 Query 165775 G 165775 | Sbjct 228798 G 228798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821723033840