Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 423 2e-113 seq30 159 4e-34 seq20 95.1 1e-14 seq145 86.0 6e-12 >seq15 Length=568429 Score = 423 bits (468), Expect = 2e-113 Identities = 623/863 (72%), Gaps = 18/863 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| ||||||| || || |||| ||| Sbjct 411039 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTTTTCCCAATCCAGTACCATGAC 410980 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || ||||| | |||||| Sbjct 410979 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAAATCGACCTG 410920 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 410919 GGCAACGACATGAAGGACTGGGCAACGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 410861 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| ||||||||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 410860 TGTGCTTGCCTTTTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 410801 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || || | |||| Sbjct 410800 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAACTGATGATGG 410742 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | || | |||| Sbjct 410741 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGAC-AGGGAG 410683 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| || ||||||| |||||| || | ||||||| ||| Sbjct 410682 GAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAG 410623 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||||| |||| | | || ||| | ||||| ||| | | ||| Sbjct 410622 TGGGCCGTGCGGTGGATCGGGAGCAGCGCG--AGCTTTCAG-GAGCGGCTGATCGGCTTT 410566 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| | |||||||| || ||| ||| | || ||||| ||||| Sbjct 410565 GCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAG 410506 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || ||||| |||||||||||||||||||| | ||||||||||| Sbjct 410505 CGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTA 410446 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || || |||||| ||| ||| | ||| | | | |||| | Sbjct 410445 CACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGA 410387 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| |||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 410386 GCGCGTGCTGGAGATTATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 410328 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 410327 CGCTGCCGGTGCGGCTGATTGGCATGAA-CGCGGAGCTGATGGCGCAGTACATCGAGTTC 410269 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| || || | | ||| Sbjct 410268 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCG 410209 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | || || ||| | | ||||| Sbjct 410208 TTCGAATTCATGGAGATGATCTC 410186 >seq30 Length=2652413 Score = 159 bits (176), Expect = 4e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || ||||| || ||||| || ||| | | || || || | | Sbjct 1354229 AATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1354170 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| | |||| || || | ||||| ||||||||||| |||||| Sbjct 1354169 CGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 1354111 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 1354110 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 1354051 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 1354050 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1354001 >seq20 Length=1057807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGC-TTCCTCACCGAAG 117287 |||||| |||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 880353 GCGCGTGCTGGAGATTATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 880295 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 880294 CGCTGCCGGTGCGGCTGATTGGCATGAAC-GCGGAGCTGATGGCGCAGTACATCGAGTTC 880236 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| || || | | ||| Sbjct 880235 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCG 880176 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 880175 TTCGACTTCATGGAGATGATCTC 880153 >seq145 Length=2684 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAG-TGCCCTACTGGGT 73639 || ||||||| ||||||||| || || |||| | | || ||| | || |||||||| Sbjct 1132 CTGAACCACGGCGTGCTGCTCGTTGGGTACGACAT-GACTGGTGAGGTTCCGTACTGGGT 1190 Query 73640 GTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGT 73690 | |||||||| ||||||| || |||||||||||||| ||||| | ||||| Sbjct 1191 GATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAAGGCTACGTGCGCGT 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218118039680