Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 1e-14 seq21 89.7 4e-13 >seq30 Length=2652413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| || Sbjct 1354002 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1354061 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 1354062 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1354121 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| ||||| | ||| ||| Sbjct 1354122 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 1354181 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | | | ||| ||||||||||| || || || || || ||||| Sbjct 1354182 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 1354228 >seq21 Length=1141120 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 134394 ATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTT-GATGCT 134452 |||| |||| |||| | || || | ||| ||||| |||| |||||| ||||| || || Sbjct 323667 ATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC 323608 Query 134453 TTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTCGGGCT 134512 |||||| ||||| | |||||| | | || || || ||| || |||||| | Sbjct 323607 AC-CAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGT 323549 Query 134513 CGCGTGCGTAAAGGTGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACGTC 134572 ||||| || ||| |||| ||| | | || || ||| ||| |||| | || Sbjct 323548 GGCGTGGGTGAAGAAGCCCTTGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATC 323489 Query 134573 GTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCA 134625 ||||||||||| | |||||||| ||||||| ||| || || || | ||||| Sbjct 323488 TGCGCCGTGAATGCCGAGAGCGACACGCATGAACATCTGCTGTGGACGCTCCA 323436 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 133210 TGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACAT 133269 ||||||| |||| ||| || || | ||||||||| || || || | || || | | Sbjct 324881 TGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGT 324822 Query 133270 TCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGG 133329 |||| || || || ||||| | |||||||||||||| ||||||| || | ||| || | Sbjct 324821 TCGAGGTAAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTG 324762 Query 133330 GCATGTACGCCACCAACAAAGAGTT 133354 ||||| || |||| || ||||| Sbjct 324761 GCATGGGGGCAACCAGCAGGGAGTT 324737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829511732256