Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21 354 7e-93 seq15 214 2e-50 seq30 100 3e-16 >seq21 Length=1141120 Score = 354 bits (392), Expect = 7e-93 Identities = 558/792 (70%), Gaps = 8/792 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| || ||||| || ||| ||| | ||||||||||| ||||| || Sbjct 324294 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATCTCC 324235 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || ||||| || ||||| || ||||| | ||| ||||||| || | ||||| Sbjct 324234 GTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCAT 324175 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||||| ||| ||||| ||||||||||| ||||||||| | ||| || | Sbjct 324174 GCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAAC 324115 Query 23201 CACATAGTCTGAGCGTGAACACGTC-GCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || || | |||| ||| | ||| || |||||| | ||| Sbjct 324114 CACACTTCCTGGGCCTGGA-TCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTA 324056 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG-CCGGGCGATTGCATCGGACACA 23318 | | ||||| || |||| || || ||| ||| |||||| || | ||| || Sbjct 324055 GAGCTGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTG-TTGGGATCCA 323997 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| | || ||| || || |||||||| ||||| || ||||| || | Sbjct 323996 TCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCG 323937 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 | ||||| || |||||||||||| || ||||| || ||||| ||||| || || Sbjct 323936 CATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAA 323877 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 || | || ||||| || ||||| |||||||| || |||||||| |||||| | |||| Sbjct 323876 AGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTAC 323817 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||| ||||| || ||||| ||||| ||||||||| | || | |||||| |||||||| | Sbjct 323816 CGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCC 323757 Query 23559 CGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||| |||| |||| | || || || | || || || | |||||| || Sbjct 323756 CGTTCGACGTGCCGTTCGTA--CCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCAC 323699 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | || ||||| ||| ||| ||| |||| |||||| | ||||| |||||||| Sbjct 323698 GTGCAGGCCAATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTA 323639 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 |||||| ||||||||||| || || | ||| |||| ||| ||||| |||||||| || Sbjct 323638 GATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTT 323579 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || || |||| || || |||||| ||||||| || ||| | || || ||||| || Sbjct 323578 CGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATGAG 323519 Query 23797 ATTGTACGTGTC 23808 | |||||| || Sbjct 323518 GTCGTACGTCTC 323507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 180/266 (68%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 |||||| || | ||||||||| || || ||||| ||| ||||| || || || || Sbjct 324868 GTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTAAAGGG 324809 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || ||||| || || ||||| | ||| || ||||| ||||| || || | Sbjct 324808 CTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAAC 324749 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 ||| || ||||| | || ||| || | || |||||| | | ||||||||| Sbjct 324748 CAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTAGCCCAGTCCCA 324689 Query 22633 CAGATCGGAC---GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 || || ||| | |||| | |||||| ||| | |||| | ||| ||| || Sbjct 324688 GCGACCGCTGTTGGGCCGCGCATTCTTCCACATGTCGAACTGCAGAATGCCCTCACTGGC 324629 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACG 22715 ||||||||| | | || ||||||| Sbjct 324628 CGGGCTGCCCGTGAAGGTCTCGTACG 324603 >seq15 Length=568429 Score = 214 bits (236), Expect = 2e-50 Identities = 556/834 (67%), Gaps = 18/834 (2%) Strand=Plus/Minus Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAA 57665 ||||| || || ||| | |||||| || || ||| || |||| | || || || Sbjct 410943 TGGACGGTGGAGGAAATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACGAC 410884 Query 57666 TCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTT 57725 ||| | | || || || || ||| | || |||||||||| ||| || || || Sbjct 410883 GGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTTTTCGCCGGCAGCGACGGCATAGTC 410824 Query 57726 AACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCT 57783 | ||||||| | | || | | |||| || | ||| | ||| | |||||| | | Sbjct 410823 ATCGAGAATCTTG-CGCA-GCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGT 410766 Query 57784 TTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCG 57843 | ||||| || ||| || || || ||| | || || || | ||| || | || | | Sbjct 410765 TCTACGGGTTCCAACTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGG 410706 Query 57844 ATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGC 57903 | |||||| | | ||||| || ||||| | | ||| | ||||||| | || || | Sbjct 410705 ACACGTACATCACGGACAGGGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGAT-C 410647 Query 57904 CCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACG 57962 ||| | ||| |||||||| |||||| | | ||||| ||| | || | Sbjct 410646 CCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGCT-- 410589 Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTT 58021 ||| ||| |||| |||| || ||||| || || || || |||||||| ||| | | Sbjct 410588 TTCAG-GAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTC 410530 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 |||| | | || ||| ||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 410529 TGCG-CGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGA 410471 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCA 58138 | | || ||||||||||||||||| || || || || || ||||| ||| |||| || Sbjct 410470 GCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCA 410411 Query 58139 CATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGAT 58198 ||| | || | | |||| || ||| | |||| |||||| || ||||| || Sbjct 410410 CATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATTATCGTGGATGCGGTGAACAT 410351 Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258 ||| ||||| || ||| || || |||||| || | || |||||| || | Sbjct 410350 CGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCT 410291 Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG--CTCGAACTGATTGGAGAG 58316 |||| | ||||||| ||||| || || ||| | || || ||| | | ||||| Sbjct 410290 GATGGCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGA- 410232 Query 58317 CGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAG 58376 || ||| || ||| | ||||| || || ||| | |||||||||| ||||||| Sbjct 410231 -AGCACTACCACTCGACGCAGCCGTTCGAATTCATGGAGATGATCTCGCTGCAGGGCAAA 410173 Query 58377 ACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 |||||||| ||||| | || || | || || || || |||||||||||| Sbjct 410172 ACAAACTTCTTCGAGAGGAAGGTGGGGGAGTACCAGAAGGCTGGCGTGATGAGC 410119 >seq30 Length=2652413 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||| | | || || || ||| | Sbjct 1354228 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1354169 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | ||||| |||||| Sbjct 1354168 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1354109 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||| ||||| ||| |||| || Sbjct 1354108 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 1354074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765463890560