Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-28 seq21 140 5e-28 >seq15 Length=568429 Score = 141 bits (156), Expect = 1e-28 Identities = 574/884 (65%), Gaps = 33/884 (4%) Strand=Plus/Minus Query 124998 TTTCCCA-TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 ||||||| || ||| |||||||| ||| | |||||| || || || | | || Sbjct 411001 TTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTG 410942 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGA 125116 |||||| || || |||| ||| ||| ||| || | || |||| || | ||| || Sbjct 410941 GACGGTGGAGGAAATCGACCTGGGCAACGACATGAAGGACTGGGCAACGC---TGAACGA 410885 Query 125117 AACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGT 125176 ||||| | || || ||| | | ||||| || |||||| ||| || || || Sbjct 410884 CGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTTTTCGCCGGCAGCGACGGCATAGT 410825 Query 125177 CAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || ||| ||||| | || ||| || ||| | ||||||| | || || | Sbjct 410824 CATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCGCGT 410766 Query 125237 T-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 | ||||| |||||| | ||||| |||||| | |||||||| | ||||||| ||| | | Sbjct 410765 TCTACGGGTTCCAACTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGG 410706 Query 125296 ACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGGTG 125354 ||| |||||| | || | | | | || | ||| | |||| || | ||| | Sbjct 410705 ACACGTACAT-CACGGACAGGGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGATC 410647 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGTCTT 125412 |||| || | || ||||| | |||| | |||||||||| | | | || || Sbjct 410646 CCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGCTTT 410587 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGT 125471 | || | ||| | | || ||||| || |||||||| |||||||| |||| || Sbjct 410586 CAGGAGCGG-----CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGT 410532 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| ||| Sbjct 410531 TCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAAC 410473 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 ||| | || || || |||||||| |||||| ||||| | ||| | ||| | |||| Sbjct 410472 GAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCG-CATGC--CTGCTGTACAAC 410416 Query 125592 TATCTGCGTCCCGAGTGC-AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | || | || | || | | ||| || || | | ||| | ||||| Sbjct 410415 T---CGCACATCAAGCACAAGCTGCCGCG-CGAGCGCGTGCTGGAGATTATCGTGGATGC 410360 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 |||| || || | ||||| | ||| | || ||||| | ||||||||||||| Sbjct 410359 GGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAA 410300 Query 125711 CTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 | |||| ||| ||| ||||||| ||||| || || || || || ||| | || | Sbjct 410299 CGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTG---GTGTCGC 410244 Query 125770 TTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 | ||| ||| ||| || | | | | || || || |||||| | || || | Sbjct 410243 TCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGAATTCATGGAGATGATCTCGC 410184 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| || || ||||| ||||||| |||||| | |||||| Sbjct 410183 TGCAGGGCAAAACAAACTTCTTCGAGAGGAAGGTGGGGGAGTAC 410140 >seq21 Length=1141120 Score = 140 bits (154), Expect = 5e-28 Identities = 324/478 (68%), Gaps = 14/478 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||| ||| || ||||| | |||||||| | || || |||||||| ||| Sbjct 323807 CAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACGCCGAC 323866 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAA---AACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 || |||| |||| | | ||| ||| ||| | || || || || ||| | Sbjct 323867 GTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGC 323923 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || ||||| || ||| | |||||| |||| |||| ||| || || || || Sbjct 323924 GACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAGGGG 323983 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||| ||| || ||| || || || |||||||| || || ||| Sbjct 323984 AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAGGAG 324043 Query 97113 TTTGAGGCCAAGTACACG-GC-CTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGAT 97169 |||||| || | ||| || ||||||| |||||||| ||| | ||||| || | Sbjct 324044 TTTGAG--CAGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGA-TCCAG 324100 Query 97170 GCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 || | ||| ||||| |||||| || | | ||| | ||||| || |||| ||| Sbjct 324101 GCCCAGGAAGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCATC 324160 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGG 97288 ||||||||||| | || |||| ||||| | | ||| ||||| |||||| | Sbjct 324161 CTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTT-GGCACAATCAAGTG 324219 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||| || || |||||||| ||||| |||||| | || ||| | |||||||| || ||| Sbjct 324220 CTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCGCAGGAGACGGCGGTGTGC 324277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057643775680