Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq21 215 1e-50 >seq21 Length=1141120 Score = 215 bits (238), Expect = 1e-50 Identities = 589/887 (66%), Gaps = 34/887 (4%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || || || ||||| ||||| |||||||| ||| | || || || || | ||| Sbjct 323432 ATTGTGGAGCGTCCACAGCAGATGTTCATGCGTGTCGCTCTCGGCATTCACGGCGCAGAT 323491 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGC 363557 | | || | ||| || || | || || ||| ||| | ||||| ||||| Sbjct 323492 CTCAAGAACGTGCGTGAGACGTACGACCTCATGTCCAAGGGCT----TCTTCACCCACGC 323547 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 ||| || || | | || || || || | || || || ||| || ||||| || | Sbjct 323548 CACCCCGACCCTCTTTAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGT 323607 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 |||||| || |||||| || |||| ||||| || ||| | || || | || Sbjct 323608 GGCGTCGAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGAT 323667 Query 363678 TTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGCACAGAACAGT 363735 ||| || ||||| ||||| || | || | ||||| | || || | ||| Sbjct 323668 CAGCAAAGCGGCCGGCGGCATTGGCCTGCA-CG-TGCACAACATCCGCGCGGCGGGCAGC 323725 Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 ||||| || || || ||||| ||||| || || ||||| || || || || Sbjct 323726 TACATAGCTGGTACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAAC 323785 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 || || || | ||||| ||||||||||| || |||||||| || || ||||| | ||| Sbjct 323786 AACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTAT 323845 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA---AACACGGGA 363912 |||||||| || ||||| | |||| ||||| ||| | |||| ||||||||| Sbjct 323846 CTCGAGCCCTGGCACGCCGACGTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGA 323902 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 ||||| || ||| || || || || |||||||| || ||| | | || | |||||| Sbjct 323903 AAAGATGACCAGCGCGCCCGCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATG 323962 Query 363973 AAGCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTT--TTGCCCACACGAATGTCCAGG 364028 | ||| ||| || ||| ||| ||| | || | | || ||||| || || || Sbjct 323963 AGGCGTGTGAAAAGCGAGG--GGAAGTGGACGCTGATGGATCCCAACACG--TGCCCGGG 324018 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGG 364088 || |||| | ||||| || | || || ||||| || || || ||||| Sbjct 324019 CCTCAGCGATTGCTATGGTGAGGAGTTTGAGCAGCTCTACGAGCGCTACGAGTCCGAGGG 324078 Query 364089 AAAGGCTCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 | ||| ||||| || | || ||| | | |||||||||||| |||| ||||||| Sbjct 324079 -CCGCGGCGTCAAGACGATCCAGGCCCAGGAAGTGTGGTTTGCCATCCTGGAGTCGCAGA 324137 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 | ||||| || || | || | ||||| || | |||||| ||||||| |||||| Sbjct 324138 TCGAGACGGGCGGGCCGTTCATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGA 324197 Query 364208 AGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACACCG 364264 || | ||||| |||| ||| || || |||||||| || |||||| | || ||||| Sbjct 324198 AGAATCTTGGCACAA-TCA--AGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGT 324254 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 | || | ||||| || || || ||||| || || |||||||| ||| Sbjct 324255 CGCCGCAGGAGACGGCGGTGTGCAACCTCGCCTCCATCGCGCTGCCG 324301 Score = 86.0 bits (94), Expect = 2e-11 Identities = 279/430 (65%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 ||||||||||| | || |||||||| || || || || | ||||| ||||| ||| Sbjct 324734 CGCAACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAAC 324793 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || ||||| || | || ||||| || || ||| || Sbjct 324794 AACGAGTGCTTCGAGCCCTTTACCTCGAACATCTACGTCCGCCGTGTGCTGAGCGGCGAG 324853 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || || || || || |||||||| |||| ||| || || || || || ||| || Sbjct 324854 TTCCCTGTTGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGTCTATGGAACGAG 324913 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||| ||| | |||||| | ||||| ||| | | ||| || | || Sbjct 324914 TCGATGCGAAACGAGATCATCTCTTACAATGGCTCTATCCTCGCTATTAACGGCATGCCG 324973 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGAT 365031 || || |||| | ||||| ||||| ||||| ||| | ||| | || || ||| Sbjct 324974 GACGACCTGAGGGAGCTTTACCGGACCGTGTGGGAGATTCCACAGCGCAAGCTGATAGAT 325033 Query 365032 ATGGCGGCCGATCGCG----GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 ||||| ||| |||| || | || | | ||| |||||| | ||| | ||| | Sbjct 325034 ATGGCACGCGACCGCGGCCAGTACATTGACCAGTC----GCAGTCGCTGAACCTCTTCCT 325089 Query 365088 GACTCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 | || || ||||||| | || | || ||||||| ||||| ||| | |||| | Sbjct 325090 -CCAGAGCCCCACCTCCGGCCAGATCACGTCCATGCTCTTCTATTCCTGGGAGGCCGGGC 325148 Query 365147 TTAAGACAGG 365156 | ||||| || Sbjct 325149 TGAAGACTGG 325158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350794531376