Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq13 100 3e-16 seq21 98.7 1e-15 seq33 84.2 3e-11 >seq13 Length=722582 Score = 100 bits (110), Expect = 3e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 15352 GGAAGTCATGTATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACC 15411 ||| ||| | |||||||| | || ||||| || || || | | || | || || Sbjct 1278 GGATGTCTTTTATTCGGGAATCACGGGCGAGTTAATGCAGGGCTACGTCTTCTTTGGGCC 1219 Query 15412 GACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGG 15471 | ||||| || || ||||| |||||||| | |||||||||||||| || ||| ||| Sbjct 1218 CATCTACTACCAGCGCCTCAAGCACATGGTCACAGACAAGATGCACGCCCGCTCGACCGG 1159 Query 15472 ACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCG 15531 | | ||| |||| ||||||||| | | ||||| || | | ||||| ||||| Sbjct 1158 GCCACGGTCGATGCTCACTCGCCAGCCAACCGAGGGTCGGTCTCGCAGTGGTGGTCTCCG 1099 Query 15532 CTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGA 15591 | |||| || ||||| |||||||| | | ||||||| || | |||||||||| Sbjct 1098 CGTTGGTGAAATGGAGCGCGACTGCATGGTTGGCTACGGCGCGTCCAACCTCCTCAACGA 1039 Query 15592 GCG 15594 ||| Sbjct 1038 GCG 1036 >seq21 Length=1141120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126180 GGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 |||| | ||||||||| || || |||||||| || | || ||||| || ||||| Sbjct 887006 GGTGAAGATGTAGCGGCCCGCGGCGTGGTCCTTGCCACCATGCAGACGCGTACCGAACTG 886947 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 ||| ||| || || | | || |||||| ||||||||||||||||| | ||| Sbjct 886946 ACCATCCTTGCGCAGCAGCGGGACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGAC 886887 Query 126300 AATGGTCTCGCAC-AGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 || |||| |||| || |||||||||||| | ||| ||| ||||| | ||||||| Sbjct 886886 GATCGTCT-GCACGAGCGACTGCTCGCCGTGGTGGTACGCGGAGTGCTCCGAGACGTAGC 886828 Query 126359 CGCTCAGCTGCGCAACCTTGATA 126381 | |||||| | ||||||||| Sbjct 886827 CAGCAAGCTGCACCACCTTGATA 886805 >seq33 Length=500272 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 15056 ATTGGCGACAAGTTTTGCT-CTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCC 15114 || ||||||||||| ||| | | | || ||||||||||| |||||| || | Sbjct 298754 ATCGGCGACAAGTTCTGCAGCCGCCACGGA-CAAAAGGGCACCAACGGCATCCAGTTTCG 298812 Query 15115 CCAGGAAGACATGCCCTT-TACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCA 15173 |||||| ||||||||||| |||||| | ||||| ||| ||| | |||||||||||| Sbjct 298813 CCAGGAGGACATGCCCTTCAACCGCGAC-GGCATCGTGCCGGACCTCATCATCAACCCCC 298871 Query 15174 ACTGCATCCCGTCCCGCATGAC 15195 || ||| || ||||||||||| Sbjct 298872 ACGCCATTCCCTCCCGCATGAC 298893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611390716076800