Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq21 114 1e-20 seq30 96.9 3e-15 >seq21 Length=1141120 Score = 114 bits (126), Expect = 1e-20 Identities = 239/353 (68%), Gaps = 11/353 (3%) Strand=Plus/Minus Query 130025 TCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG----CGCTTTTCTATCC 130080 ||||||||| ||| || | |||||| || || || | || || |||| || ||| Sbjct 323963 TCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTC-ATCT 323905 Query 130081 TCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCA 130140 | ||| |||| |||||||| || || | | | |||||||||||| || || Sbjct 323904 TTT---CCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCG 323848 Query 130141 ACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCA 130197 | ||| | || | |||||||| || || ||| || ||||| |||| ||| ||| Sbjct 323847 AGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTG 323788 Query 130198 TTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATG 130257 |||||| |||| || | ||||| | | | ||||| | ||||||||| || | | ||| Sbjct 323787 TTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATG 323728 Query 130258 AAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGAT 130317 | ||||| || || | ||| || ||| || || ||||||||| | ||| Sbjct 323727 TAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCTTTGCTG 323668 Query 130318 ATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 |||| |||||| || ||||| || || ||||| |||| |||||||| || Sbjct 323667 ATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTT 323615 >seq30 Length=2652413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 1354228 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1354169 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 1354168 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1354109 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 1354108 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 1354049 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || || ||||| | || | || |||| ||||||| || ||| Sbjct 1354048 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCTTT 1353998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727140606920