Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15 127 4e-24 seq21 105 1e-17 seq20 95.1 2e-14 >seq15 Length=568429 Score = 127 bits (140), Expect = 4e-24 Identities = 555/858 (65%), Gaps = 30/858 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||| ||||| | ||||||||| ||||| || | || Sbjct 410159 TCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTC 410218 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | ||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 410219 GAGTGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATG 410278 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | |||||||||||||| || || | || || |||||| Sbjct 410279 TACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATG 410338 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | ||| || ||| | | | | |||| Sbjct 410339 AACTCGCGCTCGATGTTCACCGCATCCACGATAATCTCCAGCACGCGCTCGCGCGGCAGC 410398 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || || || | || ||| |||||||||| Sbjct 410399 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTCCGT--GTGTAGACCCTCGT 410456 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||||| ||||||| | || | ||| || ||||||| || || ||| | || Sbjct 410457 CGCGCGAGATGAGCTCGTTG--CTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAG 410514 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG-CAA 251974 |||||| | ||||| || || || || || | | ||||| || | | | | | | | Sbjct 410515 CCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCAC-CGCGGCAAAGCCGA 410573 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGAC--AAGAACTTCTGTGCCCATGCTGCCTT 252032 || ||||| ||| || | |||| | | || | ||||| | ||||| Sbjct 410574 TCAGCCGCTCCTGAAA--GCTCGCGCTGCTCCCGATCCACCGCACGGCCCACTCCGCCTT 410631 Query 252033 CTT-TCCAACCGCGGG---GATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 ||| | | | |||| | ||| ||| |||| || || ||| ||| | | Sbjct 410632 CTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAG-CTTCTCCTC--CCT 410688 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||| |||| || || ||||| | ||||||| ||||||| |||||| || | | Sbjct 410689 -GTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCA 410747 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 || ||| | | ||||| ||||| || | | || || | ||| | Sbjct 410748 TCAGTTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCT 410807 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 |||| ||||| || || ||||| |||||||| || || ||| |||| | ||||| Sbjct 410808 GCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAAAAGGCAAGCACATGCTTGA 410867 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||| ||||| ||||||| ||| | | |||||| ||||| | ||| Sbjct 410868 TGAAGTGCCGCTCCCCGTCGTTCAGCGTTGC---CCAGTCCTTCATGTCGTTGCCCAGGT 410924 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCA 252387 | ||| ||||||||||||| | | || || ||||||| ||||| | | ||| Sbjct 410925 CGATTTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCA 410983 Query 252388 GGGTACTTGATTGGGAAA 252405 |||||| |||||||||| Sbjct 410984 TGGTACTGGATTGGGAAA 411001 >seq21 Length=1141120 Score = 105 bits (116), Expect = 1e-17 Identities = 216/318 (68%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||| ||||| ||| |||| | || ||||| || Sbjct 886671 GACTTTGTGGACAAGGAGCTGATTCTCTTCTCCATCGCCGACTG----CGAGCGCAGCAT 886726 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||||| | || ||| ||||||| ||||| |||||||| || || ||||| Sbjct 886727 CCCGAGCGTGATTGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAA 886786 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||| |||| | || ||||| | ||| || |||| || || || || || Sbjct 886787 GCGCAACTTGGTGAACTCTATCAAGGTGGTGCAGCTTGCTGGCTACGTCTCGGAGCACTC 886846 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | ||||| ||||| |||||| | ||||| | || || || ||||| ||||| Sbjct 886847 CGCGTACCACCACGGCGAGCAGTCGCTCGTGCAG---ACGATCGTCGGAATGGCGCAGGA 886903 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || ||||||||| |||||| | | |||||| | || | |||||||| ||| | || Sbjct 886904 CTTTGTGGGCAGCAACAACGT---CCCGCTGCTGCGCAAGGATGGTCAGTTCGGTACGCG 886960 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||||| ||||| Sbjct 886961 TCTGCATGGTGGCAAGGA 886978 >seq20 Length=1057807 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||||||||| | ||||||||||||||| || | || Sbjct 880126 TCGAAGAAGTTCGTTTTGCCCTGCAGAGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 880185 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | ||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 880186 GAGTGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATG 880245 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | |||||||||||||| || || | || || |||||| Sbjct 880246 TACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATG 880305 Query 251743 AATTC 251747 || || Sbjct 880306 AACTC 880310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834587581288