Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq15 174 3e-38 seq30 159 6e-34 seq21 129 1e-24 seq23 87.8 3e-12 seq14 87.8 3e-12 seq2 87.8 3e-12 >seq15 Length=568429 Score = 174 bits (192), Expect = 3e-38 Identities = 307/443 (69%), Gaps = 11/443 (2%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| ||||||||||||||| ||| | |||||||||||| | ||||||| Sbjct 410121 TCATCACGCCAGCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCT 410180 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | ||||||||| || || || | | | | | ||||| | | Sbjct 410181 GCAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGC 410240 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | | | ||||| || ||||||||||||||||| |||||| |||| || Sbjct 410241 CGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGT 410300 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 410301 TCATGCCAATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 410359 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| ||||| ||| | |||| || | | |||||||| || || | ||| Sbjct 410360 GCATCC---ACGATAATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAG 410416 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | | || | | ||| || ||||||||||| ||||| ||||||| Sbjct 410417 TTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTG 410476 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| || || || || ||||||||| | |||||||||||| Sbjct 410477 CTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 410536 Query 10347 CCGGAGAACAGAAGACCCTCCAC 10369 ||||| || | || |||||||| Sbjct 410537 CCGGAAAAGAAAATGCCCTCCAC 410559 >seq30 Length=2652413 Score = 159 bits (176), Expect = 6e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || ||| Sbjct 1354002 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1354061 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 1354062 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1354121 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||| ||||| ||| | || || Sbjct 1354122 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTCGGCTCCAC 1354180 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||| | ||| || || || || || ||||| ||||| || |||||| || Sbjct 1354181 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATTCTG 1354232 >seq21 Length=1141120 Score = 129 bits (142), Expect = 1e-24 Identities = 306/457 (67%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||||||||| || | || || ||||| ||||||||||| | || || || || | Sbjct 324276 CACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCAC 324217 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| ||||| ||| ||| | ||| ||| || || |||||||| ||| | Sbjct 324216 TTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGC-GTCCTTGTAGAGGAT 324158 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | ||| ||||||||||||||||| | || ||| ||| || || | || | Sbjct 324157 GAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCACACTTCCTGGGCCTG 324098 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || ||| | | || ||||||||||||||||| || || | ||| |||||| Sbjct 324097 GATCGTCTTGACGC-CGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCTGCTCAAACTCCT 324039 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACAT 31998 ||| || |||| | || || || ||| ||||| || | |||| ||| | | Sbjct 324038 CACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCT 323979 Query 31999 CGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGG 32058 || | || ||| |||| ||||| || | ||||| ||| || || || | | || Sbjct 323978 CGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGG 323919 Query 32059 CGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGGT 32118 |||| ||| || | ||| ||| ||| |||||||| ||| | | || ||||| || Sbjct 323918 CGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGT 323859 Query 32119 GGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 | ||||||||| || ||||| || | |||||||| Sbjct 323858 GCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCG 323822 Score = 87.8 bits (96), Expect = 3e-12 Identities = 303/473 (64%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 176025 ATGAGGCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTA 176084 |||||||||| | ||| | ||| ||| |||||||| ||| ||| | ||||| Sbjct 887221 ATGAGGCGCTCGAGGTTGCTAATGATCTCCAGCGGGTTGTAGTTCGGGATGCTTGTGCTG 887162 Query 176085 AATCCTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAG 176144 || || || || || || | || || |||||||| | | ||||||| |||| ||| Sbjct 887161 AACCCGGTGCCGATGCCCGTCGTGCCGTTCACCAGCACCATCGGGATGACCGGAATGTAG 887102 Query 176145 TATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCC 176204 | || || | | | ||||| || || ||| | | || | ||||||||| Sbjct 887101 AAGAAAGGCTCCACCGAGAGACCGTCGTCGTCCTTGTACTCGACCACAAAGTCGTCGGCC 887042 Query 176205 TTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCA 176264 ||| || || |||||| | | || | |||||||| || | | | || Sbjct 887041 GGGTGAAAGATGGCCCGGGCGACCTGCATGAGCCGGGTGAAGATGTAGCGGCCCGCGGCG 886982 Query 176265 CTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATG 176324 ||||||||| || || || || | |||||| || || | |||| || | Sbjct 886981 TGGTCCTTGCCACCATGCAGACGCGTACCGAACTGACCATCCTTGCGCAGCAGCGGGACG 886922 Query 176325 TTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCG 176384 || || ||||| |||| || ||||||||||| || | | ||| ||| |||| Sbjct 886921 TTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGACGATCGTCTGCACGAGCGACTGCTCG 886862 Query 176385 CCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCT 176444 |||||||| || ||| || ||| ||| || |||| |||| | || ||||| Sbjct 886861 CCGTGGTGGTACGCGGAGTGCTCCGAGACGTAGCCAGCAAGCTGCACCACCTTGATAGAG 886802 Query 176445 TGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTT 176497 | || | ||||||||| || |||||||| ||||| ||||| |||||| Sbjct 886801 TTCACCAAGTTGCGCTTGAAGCAGGAGAACAGGATCTTGCGCTGGCCGGGCTT 886749 >seq23 Length=391143 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 264673 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGACCCCCAC 264730 >seq14 Length=762675 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 442865 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 442922 >seq2 Length=522747 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 495270 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 495327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620464592960