Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 311 2e-79 seq15 260 3e-64 >seq21 Length=1141120 Score = 311 bits (344), Expect = 2e-79 Identities = 972/1474 (66%), Gaps = 51/1474 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 ||||| |||| ||||| || | | ||||| |||||||| || || | |||| Sbjct 324948 GAGCCATTGTAAGAGATGATCTCGTTTCGCATCGACTCGTTCCATAGACC-ACGCGCGAT 324890 Query 244070 -AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTG 244128 || || ||| |||| | ||||||| || | ||||| || |||||| ||||| Sbjct 324889 GAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGAC 324830 Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 ||||| ||| | | | ||||||| || ||| ||||||| || ||||||| ||| Sbjct 324829 GTAGATGTTCGAGGTAAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGA 324770 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGA 244247 ||| || |||||||| | |||||||| ||| | || ||| | ||| || | Sbjct 324769 CGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGCC---CACCTGCATCACCTT 324713 Query 244248 GTC--TGAG-CTCGTTCCAGTCCCACATGCCCGAGA-GGTCCTCGCGTTTGAGGCCCCAC 244303 || |||| || | ||||||||| || | || || ||| || |||| Sbjct 324712 CTCCTTGAGGCTAGC-CCAGTCCCAGCGACCGCTGTTGGGCCGCGCATTCTT----CCAC 324658 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| |||||||| | |||| ||| | ||||||||| | ||||| ||| | || Sbjct 324657 ATGTCGAACTGCAGAATGCCCTCACTGGCCGGGCTGCCCGTGAAGGTCTCGTACGCGCCC 324598 Query 244364 TCGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 || || ||||||| || | | |||| || || ||||||| || |||||||| Sbjct 324597 TCCTCCTTCGCCAGCTC-CATCGACGACTCGACCGCAGCAAAGTAGATCGTTTCGAAGAT 324539 Query 244423 CATCTTGTTCATGTCGCGG-GCCTT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAG 244480 | | ||||| ||| | |||| |||| || || || | | ||| | |||||| Sbjct 324538 CTCCGCGTTCACC-CGCTGCGCCTCCGCCG-AGACAAACGGCAGCCGCATGAGGATGAAG 324481 Query 244481 ACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CAT 244539 |||| || || ||||||||||||| ||| | ||| | || ||| |||| ||| | Sbjct 324480 GCGTCCGCAAGCCCCTGCACGCCGAGGCCAACGGGGCGGTTGCGCATGTTACTGCGGCGC 324421 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 | | || | || ||||| |||||| ||| || || |||||||||||| |||||| | Sbjct 324420 GCCGTCTCG-ACCGGGTAGTAGTTGCGGTCAATAACGCGGTTGAGGTTGCGTGTGATC-T 324363 Query 244600 GCG--GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTG 244657 || | | ||| | || ||||| || || | || |||| || | | Sbjct 324362 GCTTTGTC-ACGGTGTAGAGAAGCTG---GTGGTTC----AG-----CTCG-CGCTTCTC 324317 Query 244658 ATCCTC-ACAAACTCGTTG-AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 | | || || || || | || |||| | ||| |||||||| || ||| ||||| || Sbjct 324316 AACGTCGACGAAG-CGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCG 324258 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 ||||||| ||||||||| ||||| ||||| ||||||||| ||||| || | || Sbjct 324257 GCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCT 324198 Query 244776 GGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 || || |||||| |||||| |||||||||||||| ||||| ||||| || ||||||| Sbjct 324197 TCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGA 324138 Query 244836 GCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGC 244895 ||| | | |||| | ||| | ||| |||| || |||| || | || Sbjct 324137 TCTGCGACTCCAGGATGGCAAACCACACTTCCTGGGCCTGGATCGTCTTGACGCCGCGGC 324078 Query 244896 CCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGC 244955 |||| | ||||||||| ||| || ||| ||||| || || ||| |||| Sbjct 324077 CCTCGGACTCGTAGCGCTCGTAGAGCTGCTCAAACTCCTCACCATAGCAATCGCTGAGGC 324018 Query 244956 CGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGA 245015 | ||||||| || ||| || |||||| || || || || | | ||| | Sbjct 324017 CCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAA 323958 Query 245016 AGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAG 245075 | || || |||||||| || || | ||||||||| | || | ||| || || || | Sbjct 323957 ACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCG 323898 Query 245076 TGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAG 245135 |||| ||||| || |||| ||||||||||| ||||||||||||| | ||||| | Sbjct 323897 TGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGG 323838 Query 245136 CGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTG 245191 | | |||||| ||||| ||| |||||||||| | | || ||| |||| Sbjct 323837 CAAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCA----CGTAGCGGGCGGTGTTGTTG 323782 Query 245192 AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCG 245251 |||| ||| || | ||||| | ||||| || |||||| || || |||||| | Sbjct 323781 AAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTG 323722 Query 245252 CCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGG 245311 ||| | | || |||| | | || ||| | |||||||| ||| ||| | Sbjct 323721 CCCGCCGCGCGGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCTTTGCTGATCACC 323662 Query 245312 GCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGA 245371 ||||| ||| | ||||| ||||| || |||||||| |||| | ||| Sbjct 323661 GCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGG 323602 Query 245372 AAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGG 245431 ||||| ||| || || ||||| ||| ||| | ||| || || || ||| |||||||| Sbjct 323601 AAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGG 323542 Query 245432 GTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCT 245465 || ||| ||| | || | || ||||||||| Sbjct 323541 GTGAAGAAGCCCTTGGACATGAGGTCGTACGTCT 323508 >seq15 Length=568429 Score = 260 bits (288), Expect = 3e-64 Identities = 574/847 (68%), Gaps = 15/847 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 410994 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 410935 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 ||||| || ||||||| ||| |||| | | ||||| | ||| || || | Sbjct 410934 GAGGAAATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGG 410875 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| | | || ||||| ||||||| | ||||||||||||| ||||| Sbjct 410874 CACTTCATCAAGCATGTGCTTGCCTTTTTCGCCGGCAGCGACGGCATAGTCATCGAGAAT 410815 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 410814 CTTGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTT 410756 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 ||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 410755 CCAACTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 410696 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| | ||| ||||| | | || || ||||||| || |||||| | Sbjct 410695 CACGGACAGGGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCA 410636 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||||||| ||||| | ||||||| ||| || || | | ||| | ||| | Sbjct 410635 GAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCG-CG-AGCTTTCAG-GAGCG 410579 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| | | |||| |||| || |||||||| ||||| || || | ||| | | | || Sbjct 410578 GCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTT 410519 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 410518 CTGGCTGAAGAAGCGCGGTCT-GATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGC 410460 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGC 42879 | |||||||| || || | |||||| || ||||| |||| |||| ||| ||| || Sbjct 410459 GCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCG---CACATCAAGC 410403 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||||| || ||||| || | || || ||| ||| || ||| | |||||| | Sbjct 410402 ACAAGCTGCCGCGCGAGCGCGTGCTGGAGATTATCGTGGATGCGGTGAACATCGAGCGCG 410343 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | ||||||| ||| ||| | ||||||||| || || ||| Sbjct 410342 AGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGC 410283 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| |||||| |||| || || ||| | || || | | |||| Sbjct 410282 AGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAG-CACTAC 410224 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || || || || ||||| || ||||||| |||||| || ||||||| || ||||| Sbjct 410223 CACTCGACGCAGCCGTTCGAATTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTC 410164 Query 43119 TTCGAGA 43125 ||||||| Sbjct 410163 TTCGAGA 410157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337216887680