Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq15 107 4e-18 seq20 104 5e-17 >seq15 Length=568429 Score = 107 bits (118), Expect = 4e-18 Identities = 267/403 (66%), Gaps = 7/403 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 410559 GTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 410500 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| || || || || | |||||| ||||| ||||||||||| || ||| Sbjct 410499 CTGATGCCAGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGTCTACACA 410442 Query 243437 AACAGTTCGGTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACGG 243493 | |||| || |||| || | || || ||||||| || ||| | Sbjct 410441 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 410382 Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 | | || ||| || || || | | ||| || ||||| |||||||| | | Sbjct 410381 TGCTGGAGATTATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 410322 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||||| |||||||||||| | || || |||| ||||||||||| ||||| || | Sbjct 410321 CGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTACATCGAGTTCGTCGCGG 410262 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || | ||||| ||| |||| | | | || || | | Sbjct 410261 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGAAT 410202 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 | |||||| | || ||||| || || ||||| ||||||||||| Sbjct 410201 TCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGA 410159 >seq20 Length=1057807 Score = 104 bits (114), Expect = 5e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| |||||||||||| | || || |||| Sbjct 880310 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 880251 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 ||||||||||| ||||| || ||||| | | | |||| || | ||||| ||| Sbjct 880250 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 880191 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 |||| | | | || || | ||| |||||| | || || || || || ||||| |||||| Sbjct 880190 CACTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCTCTGCAGGGCAAAACGAACTTC 880131 Query 243712 TTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 ||||| ||| | || | || || || | | || || ||||||| Sbjct 880130 TTCGAGAAGAGGGTGGGGGAGTACCAGAAGGCC-GGCGTGATGA 880088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877626050800