Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq21 352 3e-92 seq15 154 1e-32 seq20 109 5e-19 seq30 84.2 2e-11 >seq21 Length=1141120 Score = 352 bits (390), Expect = 3e-92 Identities = 612/869 (70%), Gaps = 27/869 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCACGATCTC 153655 || || || || || || || || |||||||| | ||||| || |||||| || ||||| Sbjct 324294 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATCTC 324236 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| ||||| ||| || || ||| | ||| | ||| || |||| ||||| Sbjct 324235 CGTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCA 324176 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772 ||||| ||| |||| ||| |||| ||||| ||||||| |||| || | ||| ||| Sbjct 324175 TGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAA 324116 Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 || || ||||| || | | | || | || |||||||||| |||||| |||| Sbjct 324115 CCA---CACTTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCT 324060 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-TGATGCGGA 153890 |||| || |||||||||| || || ||||| ||| |||||| || ||| || || ||| Sbjct 324059 CGTAGAGCTGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTG-GGA 324001 Query 153891 CACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAG 153950 |||||||| |||| | | ||| || || || | ||| |||||||| || | ||| Sbjct 324000 TCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCAC 323941 Query 153951 AGCGCGTACATGAGGTCGCG--CGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008 ||||| || | ||||||||| ||| || || || ||| ||||||||||||| Sbjct 323940 AGCGCATAGAAGAGGTCGCGGGCGCGCTGG--TCATCTTTTCCCGTGTTGCGTTTCAGCA 323883 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 || | || | ||| ||||||||||||||| || | |||||||| | ||| || || | Sbjct 323882 GCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGC 323823 Query 154069 GCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 |||| ||| ||||| || |||| ||| | | |||||||||||||| | ||| || Sbjct 323822 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCA 323763 Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGAT 154185 | || ||| | | |||||||| || | || | |||||| ||||| | | | Sbjct 323762 CGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGT 323703 Query 154186 GCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAGTCGCCCAGCGT 154243 |||||| | |||||||||||| |||| ||||| | || | ||||| || |||||| Sbjct 323702 GCACGTGCAGGCCAATGCCGCCGGCCG--CTTTGCTGATCACCGCGCACTCCTTCAGCGT 323645 Query 154244 CCTGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAACACGAACACATTT 154302 |||||||||||||||||| || | | |||||| | || ||| ||||| | ||||| Sbjct 323644 GTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTT 323586 Query 154303 GCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGG 154361 |||| | | || || || ||||||||| || | ||||| || || || |||| Sbjct 323585 GCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGG 323526 Query 154362 CTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCG 154421 ||| | | |||||| || ||| | || ||| |||||||||||||||| ||| Sbjct 323525 -ACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAGCG 323467 Query 154422 ACGCGCATGAGCATGTGCTGCGGACGTTC 154450 || ||||||| ||| ||||| ||||| || Sbjct 323466 ACACGCATGAACATCTGCTGTGGACGCTC 323438 >seq15 Length=568429 Score = 154 bits (170), Expect = 1e-32 Identities = 366/539 (68%), Gaps = 13/539 (2%) Strand=Plus/Minus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| | || ||| | |||||| | | || ||||| ||||||| || Sbjct 410671 GCTGCTGCACGCGATACAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGC 410613 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||||| |||| | ||| | ||| | | |||| || | | ||| ||| || Sbjct 410612 GGTGGATCGGGAGC---AGCGCGA-GCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTG 410557 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | || |||||||| || ||| | || | | || | | || | Sbjct 410556 GAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTG 410497 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| | || ||||||||||| || || ||||||||| Sbjct 410496 ATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 410437 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || || ||||| ||||| ||| | | | | || || || | || | Sbjct 410436 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 410377 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| ||||| | | |||||||||||| Sbjct 410376 GAG-ATTATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 410318 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGATC 52719 |||| | |||||||||||| || ||| ||| ||||||||||||| || ||||| | Sbjct 410317 GCGGCTGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGGACC 410259 Query 52720 GTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTT 52778 | ||| ||||| |||||| || ||| ||| | || | ||| | ||||| || || Sbjct 410258 GGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGC-AGCCGTTCGAATTC 410200 Query 52779 ATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| ||||||| || ||||| ||||||| | || || ||||| Sbjct 410199 ATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAGGAAGGTGGGGGAGTA 410141 >seq20 Length=1057807 Score = 109 bits (120), Expect = 5e-19 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGT 52707 |||||||||||| |||| | |||||||||||| || ||| ||| |||||||||||| Sbjct 880296 CGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGT 880238 Query 52708 TTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGC-TCGCAAT 52766 | || ||||| || ||| ||||| |||||| || ||| ||| | || | ||| | Sbjct 880237 TCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGC-AG 880179 Query 52767 CCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGA 52826 ||||| || || ||| | | || || || ||||||| || ||||| ||||||||| | Sbjct 880178 CCGTTCGACTTCATGGAGATGATCTCTCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGG 880119 Query 52827 GTCGGCGAGTA 52837 || || ||||| Sbjct 880118 GTGGGGGAGTA 880108 >seq30 Length=2652413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 ||||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 1354000 AGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 1354059 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || || ||||| || || || |||| |||| || ||||| |||||||| | Sbjct 1354060 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 1354119 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || || || ||||| ||| || || | | || | |||||| ||| ||||| Sbjct 1354120 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCA 1354179 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||| || || ||||| || || || || || ||||| Sbjct 1354180 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 1354228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261357848960