Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq21 127 2e-24 seq30 104 2e-17 >seq21 Length=1141120 Score = 127 bits (140), Expect = 2e-24 Identities = 565/878 (64%), Gaps = 45/878 (5%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTC 146693 ||||| ||||| | ||| || || || ||||| | | | || |||| |||||||| Sbjct 324294 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTG-TACTCGACAATCTC 324236 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTGTTG 146751 | ||| ||||| ||||||||| |||| | ||| || ||||| ||| ||||| Sbjct 324235 CGTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGC--TGTTG 324178 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAAT 146811 || | |||||||||||| ||| |||| || || || |||| | | ||| | |||| Sbjct 324177 CATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGG-- 324120 Query 146812 CTAAACAAATCTC-TGGCCTTTACTTGTCTTT-CGTACAGTTTATTCTTTTCGTATTTCT 146869 | || || | || ||| | | | ||||| || | | ||||| || Sbjct 324119 CAAACCACACTTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCT 324060 Query 146870 CGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGAC 146929 |||| | ||||| ||| || ||| |||||| || || | |||||| Sbjct 324059 CGTAGAGCTGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGAT 324000 Query 146930 AGAACAGCGACCATTCTTTATTCTCCTT-CACGCGTTCCATAAACAAATCGGGAATCCAA 146988 | ||||| ||| | | || | || ||| || |||||||| ||| || ||||| Sbjct 323999 CCATCAGCGTCCACT-TCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCAC 323941 Query 146989 AG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTT 147047 || || || | | |||||| || ||| || ||| |||||||| ||| | Sbjct 323940 AGCGCATAGAAG-AGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCA-GCA 323883 Query 147048 GAGGACATCGTAA-ATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTC 147106 | || | | || | || | ||||| ||||| | || |||| | ||||| || | Sbjct 323882 GCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGC 323823 Query 147107 GCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACA 147163 |||||||||| ||| || |||| ||| | |||| |||||||| |||| ||| | || Sbjct 323822 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCA 323763 Query 147164 CGAGGCCGCCGGATTTTGTGGTGCCGTTG--------TATTGAGC----------GCTGA 147205 |||| ||| || | |||||||| ||| ||| || || Sbjct 323762 CGAGCCCG------TTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGA 323709 Query 147206 CGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCA 147265 | | |||||| ||| || | || ||| || || |||| ||| |||| | || Sbjct 323708 TGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCA 323649 Query 147266 AGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAACACGAACAC 147324 || | ||||||||||||||||||||||||||| || || |||||| ||||| | | Sbjct 323648 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGC-CACCAGGAAGCACGAGCTC 323590 Query 147325 ATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCC 147384 ||||| || ||||| || ||| || || ||| ||||||| ||||| |||| Sbjct 323589 ATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCC 323530 Query 147385 AGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGG 147444 ||| | | ||||| ||| || || | | || ||||||||||| | || Sbjct 323529 TTGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGA 323470 Query 147445 GCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAAT 147482 ||||| ||||||| ||| ||||| || || ||| |||| Sbjct 323469 GCGACACGCATGAACATCTGCTGTGGACGCTCCACAAT 323432 >seq30 Length=2652413 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 1354002 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1354061 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 1354062 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1354121 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 1354122 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 1354181 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | | | ||| ||||||||||| || || || || || ||||| Sbjct 1354182 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 1354228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499801448320