Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 143 4e-29 >seq21 Length=1141120 Score = 143 bits (158), Expect = 4e-29 Identities = 555/859 (65%), Gaps = 10/859 (1%) Strand=Plus/Minus Query 204841 GGCGGCCAGATTGCACACCGCGGGTCTG-TGTGGCTCGCTCACCTCCACGATCTCGGTGC 204899 || ||| || ||||||||||| | ||| || ||| | ||| || ||||| |||| Sbjct 324289 GGAGGCGAGGTTGCACACCGCCG-TCTCCTGCGGCGACGTGTACTCGACAATCTCCGTGC 324231 Query 204900 ACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGT 204959 | | ||| |||||| | || | || || |||||| ||||||| ||| || | || Sbjct 324230 ATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGT 324171 Query 204960 CCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACA 205019 ||||||| | ||||||||| || |||| ||||| || ||| ||| ||||| Sbjct 324170 CCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCACA 324111 Query 205020 ATTCGCGAGCCTCCACTTGCTTCACGTA-CATCCCTTGAGACTCGTATTTTGTGTACAGC 205078 ||| | |||| | ||| ||| | |||| | |||||||| ||| ||| Sbjct 324110 CTTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCG-GACTCGTAGCGCTCGTAGAGC 324052 Query 205079 GCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGA 205138 | |||| || ||| || || | || || || || | |||||| |||||| Sbjct 324051 TGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCATCAGC 323992 Query 205139 GACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAA 205198 | |||| || ||| |||||| | | ||||||||| || ||||||||| | || Sbjct 323991 GTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAG 323932 Query 205199 AACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCC 205258 || || || ||||| | | || | ||| ||| ||||| ||| ||||| Sbjct 323931 AAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGA-AAGCC 323873 Query 205259 GCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCC 205317 | | |||||||||||| ||||| | | ||||| | ||||| | ||| || Sbjct 323872 AAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCC 323813 Query 205318 ACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTT 205377 |||||||||||| ||| | | |||||| || || ||||| ||||| || ||||| Sbjct 323812 ACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 323753 Query 205378 GGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGC 205437 | || |||||||| | ||| ||| | || | | |||| | | | Sbjct 323752 CGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAG 323693 Query 205438 GCCAATCCCGCCAGAACACTTGGC-GATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGC 205496 |||||| ||||| | | ||| || |||| |||||||| | ||| ||| |||||||| Sbjct 323692 GCCAATGCCGCC-GGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTAGATGC 323634 Query 205497 CTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTG 205555 | ||||| || ||| | | |||||| ||||||| || | ||| | | Sbjct 323633 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCG-GG 323575 Query 205556 GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTG 205615 ||||| |||| ||||| || ||| |||||||| ||||| || | || | Sbjct 323574 GTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATGAGGTCG 323515 Query 205616 TAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAG 205675 || ||||| ||||| ||| ||||| ||||||||| || | |||| | |||||| Sbjct 323514 TACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAGCGACACGCATGAAC 323455 Query 205676 AGGTGTTGAGGTCTCTCCA 205694 | || || || | ||||| Sbjct 323454 ATCTGCTGTGGACGCTCCA 323436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153530174080