Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 304 1e-77 seq30 136 4e-27 seq20 87.8 2e-12 >seq15 Length=568429 Score = 304 bits (336), Expect = 1e-77 Identities = 642/935 (69%), Gaps = 32/935 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||||||| || || || || |||||||| |||| || || || ||||| |||| Sbjct 410122 CATCACGCCAGCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTG 410181 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| || || || || | | | || ||||||||| ||| Sbjct 410182 CAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCC 410241 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || | | | || ||||||| ||| || |||||||||||||| |||| ||| | | ||| Sbjct 410242 GAGC--GAC-ACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGC 410298 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCG 132825 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| Sbjct 410299 GTTCATG-CCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTC 410356 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC-- 132882 ||||| || || || ||| |||||| | |||| | || ||| | ||| Sbjct 410357 ACCGCATCCACGATAATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGA 410415 Query 132883 -TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 ||| ||| || ||| || ||||| || | |||||||| | || ||||| ||||| Sbjct 410416 GTTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTT 410475 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||||| |||| || ||||| || ||||| || || ||||| || | ||| ||| Sbjct 410476 GCTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGA 410535 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGG 133060 || |||||||| | |||||| || || || |||||| | ||| ||||| | ||| | Sbjct 410536 CCCGGAAAAGAAAATGCCCTCCACCGCGGC-AAAGCCGATCAGCCGCTC-CTGAAAG--- 410590 Query 133061 CTT-CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 || | |||| ||||||| |||| ||||| || ||||| | | || |||||| ||| Sbjct 410591 CTCGCGCTGCTCCCGATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATC 410650 Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATG 133179 || | || |||| || || || || ||||| ||| | | ||| ||||| | Sbjct 410651 GTCTGTATCGCGTGCAGCAGCCGCAGCTTCTCCTCCCTGTCCGTGATGTACGTGTCCAGC 410710 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 || || ||| | |||||||| | ||||||||| | ||| || ||||| || Sbjct 410711 AGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGTTGGAACCCGTAGAACGCG 410770 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 |||||||| ||||| ||| || ||| |||| | ||||| ||| |||| ||| Sbjct 410771 CGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATG 410830 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 ||||||||| ||||||||||||| ||||| ||||||||||| || ||||| ||||||| Sbjct 410831 CCGTCGCTGCCGGCGAAAAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTC 410890 Query 133360 AAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 |||| | ||||||| | |||| ||| |||||| | ||||| || ||||| || Sbjct 410891 -AGCGTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATTTCCTCCACCGTCCA----GA 410945 Query 133419 CGC--CTCGGCT--TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCA 133474 || ||| || | |||||| | | ||| ||||| || || || || |||| | Sbjct 410946 TGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAAAGGA 411005 Query 133475 CAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 | | ||| ||||| || || |||||||||| Sbjct 411006 CGTAGCGGAACGGGTTCTCCTGCTGCAGCGGCTCC 411040 >seq30 Length=2652413 Score = 136 bits (150), Expect = 4e-27 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || ||||| || ||||| || ||| | | || || ||| | | Sbjct 1354229 AATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1354170 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-AC 38360 ||||| | | |||| | || | || |||| ||||| ||||| || ||||||| || Sbjct 1354169 CGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGAC 1354112 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||| Sbjct 1354111 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTAC 1354052 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 1354051 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1354001 >seq20 Length=1057807 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/248 (70%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || |||||| | ||||| || || || ||||| |||| Sbjct 880089 CATCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTG 880148 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| || || || || | | | || ||||||||| ||| Sbjct 880149 CAGAGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCC 880208 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGC 132766 || | | | || ||||||| ||| || |||||||||||||| |||| ||| | | ||| Sbjct 880209 GAGC--GAC-ACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGC 880265 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCG 132825 || | || | ||| |||||||||||||| ||| || ||| || |||||||| Sbjct 880266 -GTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCG-CGCTCGATGTTC 880323 Query 132826 ACCGCGTC 132833 ||||| || Sbjct 880324 ACCGCATC 880331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171749637120