Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq21 125 9e-24 >seq21 Length=1141120 Score = 125 bits (138), Expect = 9e-24 Identities = 557/865 (64%), Gaps = 19/865 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||||||||||| ||||| |||| || || || | |||| | | || Sbjct 323444 CCACAGCAGATGTTCATGCGTGTCGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTG 323503 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||| |||||| |||||| || | |||| |||||| || || |||||||| Sbjct 323504 CGTGAGACGTACGACCTCATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 323563 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || || | || |||||| | || ||||| | || ||||| || Sbjct 323564 AACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGAC 323623 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT-CAAAGTGGGCTGG 111850 ||| | ||||| |||| ||| || | || || || ||| ||||| || | || Sbjct 323624 AGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAGCGGCC-GG 323682 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA-GGTACAA 111909 || || || ||||| | || | || | || | | | ||| ||||| | Sbjct 323683 CGGCATTGGCCTGCACGTGCACAACATCCGCGCGG-CGGGCAGCTACATAGCTGGTACGA 323741 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 323742 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 323801 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | ||| || |||||||| | | || |||||||| ||||| ||||||| Sbjct 323802 TGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACG 323861 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 | || || | | || || | || | |||| || | || || ||| || Sbjct 323862 CCGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCC 323921 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAGAGT 112145 |||| ||||||| || || ||||| |||||||| || |||| | | || | | ||| Sbjct 323922 GCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAGG 323981 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || || ||| | || | ||| ||| | || || ||| |||| | |||||| Sbjct 323982 GG-AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAG 324040 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTGCC 112264 |||||||| |||||| |||||| || | || |||| | |||| | || Sbjct 324041 GAGTTTGAGCAGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-CC 324098 Query 112265 AGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 || ||| || |||||| || || || |||| || | |||||| || || | Sbjct 324099 AG--GCCCAGGAAGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTT 324156 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 || || ||||| ||||| || ||| ||| || || |||||| | || ||||| Sbjct 324157 CATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACAATCAA 324216 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG-ATGAGACGGCTGTGT 112440 | | || ||||| || || || || | || | || | | | | |||||||| |||| Sbjct 324217 GTGCTCGAACCTATGCACGGAGATTGTCGAGTACAC-GTCGCCGCAGGAGACGGCGGTGT 324275 Query 112441 GTAACCTCGCATCAATCGCTCTCCC 112465 | |||||||| || ||||| || || Sbjct 324276 GCAACCTCGCCTCCATCGCGCTGCC 324300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741096440960