Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21 132 6e-26 seq16 86.0 7e-12 seq30 82.4 9e-11 seq17 82.4 9e-11 seq8 82.4 9e-11 >seq21 Length=1141120 Score = 132 bits (146), Expect = 6e-26 Identities = 552/856 (64%), Gaps = 19/856 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || |||||||| | | |||||||| | | Sbjct 324300 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 324241 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| || || || | |||||| ||||| ||| || Sbjct 324240 ATCTCCGTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTG 324181 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| || ||||||||||| ||| | ||| |||||||| |||| |||| || || Sbjct 324180 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 324121 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 106692 || |||||| | | | | |||| || | ||| ||| || ||||| | |||||| Sbjct 324120 GCAAACCACACTTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 324065 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 106751 |||||| |||||||||||| ||| || ||| ||| || || | ||| Sbjct 324064 GCGCTCGTAGAGCTGCTCAAACTCCTCA-CCATAGCAATCGCTGAGGCCCGGGCACGTGT 324006 Query 106752 CTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 ||| | || | ||| || || | || || || ||| |||| || || ||||| Sbjct 324005 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTC-ACACGCCTCATAAACAGATCTGGG 323947 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 |||||||| | | ||||| || | || || || | || |||| || Sbjct 323946 ATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 323887 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | | || || | | || || |||||||| ||||| |||||||| || | | ||| Sbjct 323886 AGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCC 323827 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 || || || ||| | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 323826 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 323767 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCAC 107046 || | | || | || || || || || || || | || | | Sbjct 323766 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTAT-GTAGCTGCCCGCCGCGCGGAT 323708 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAA 107105 | || | ||||| ||||| || || | || ||||| ||| ||| |||||| | | Sbjct 323707 GTTGTGCACGTGCAGGCCAATGCCGCC-GGCCGCTTTGCTGATCACCGCGCACTCCTTCA 323649 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 323648 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 323589 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 323588 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 323529 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 |||||| |||||| ||||| || | | ||| | ||||| ||||||| | Sbjct 323528 TGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAG 323469 Query 107286 CCACACGCATAAACAT 107301 | |||||||| ||||| Sbjct 323468 CGACACGCATGAACAT 323453 >seq16 Length=772477 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 227523 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 227464 Query 136226 GGTAGGA 136232 ||||||| Sbjct 227463 GGTAGGA 227457 >seq30 Length=2652413 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1585915 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1585856 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 1585855 CAGGTAGGAG 1585846 >seq17 Length=844406 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 624655 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 624714 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 624715 CAGGTAGGAG 624724 >seq8 Length=685498 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 438029 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 437970 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 437969 CAGGTAGGAG 437960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979561040320