Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq33 163 2e-35 >seq33 Length=500272 Score = 163 bits (180), Expect = 2e-35 Identities = 406/609 (67%), Gaps = 18/609 (3%) Strand=Plus/Minus Query 29787 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 29846 ||||||||| | ||| || | || ||||| | |||||||||| ||||| || ||||| Sbjct 370279 CTCGAGCTGCGCCTTGAGGGCATCAACGTGGTTGCGGTAGACGTGGGCGTCGCCGAGGGT 370220 Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 370219 GTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 370160 Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966 |||| ||||||||| ||||| || || || |||||||| | ||| | |||||| | | Sbjct 370159 GTAGGAGGCGATGTTGAAGGGGACGCCAAGACCCATGTCGCACGAGCGCTGGTACAACAT 370100 Query 29967 ACACGAGAGCTCTCC---GTC---GCTCACGTAAAACTGACACATGGTGTGGCACGGAGG 30020 || || ||||| | ||| | ||||||| |||||| | ||||||||| || Sbjct 370099 GCAGGATAGCTCGCTCGTGTCTGTGTTCACGTAGAACTGAGCAAGCAAGTGGCACGGCGG 370040 Query 30021 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30080 || ||||| || | ||||||||||| || | || ||| | ||| | Sbjct 370039 CAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGACTAGGAGGCGGCGGTCGTT 369980 Query 30081 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA-GT 30139 ||||| | ||||| |||||| | | | ||| |||||||| || ||| || Sbjct 369979 CGGGTTCGCCTTGATGGTCTCCACGATGAGCTTGATCTGGTCCACCCCT-TCGCCGTCGT 369921 Query 30140 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30199 ||| ||| | || |||| ||||| ||||| || | ||||||||| ||||| || | Sbjct 369920 AGTTCGCCTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAG 369861 Query 30200 GTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTG 30255 | || ||||| ||| | ||| |||| ||||| | |||| | ||| || | Sbjct 369860 GGCCGAGGTCCATCTCCTTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTCGCGC 369805 Query 30256 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 30315 || |||||| |||||||||| | | |||| || | ||| | | | | || | Sbjct 369804 GAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCTGCCAGCACCTGCGCACTCGTCTCC 369745 Query 30316 CCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30374 || | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| ||||| Sbjct 369744 CCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTCGT 369686 Query 30375 GAGGAGGGG 30383 || || || Sbjct 369685 CAGCAGCGG 369677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 52112 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52171 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 298813 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 298872 Query 52172 CGCCTTTCCATCCAGGATGACCGT 52195 |||| |||| ||| | ||||| || Sbjct 298873 CGCCATTCCCTCCCGCATGACAGT 298896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616763355464