Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq21 181 2e-40 seq15 152 1e-31 >seq21 Length=1141120 Score = 181 bits (200), Expect = 2e-40 Identities = 572/871 (66%), Gaps = 33/871 (4%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| ||||| ||| ||| | | || |||| | ||||| || || || Sbjct 324286 GGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATCTCCGTGCATAG 324227 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| ||||||||| || || || | || || || ||||||| ||| |||||||| Sbjct 324226 GTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTT 324167 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 |||||| || || || ||||| ||||| | ||| | | |||| || ||| | ||| Sbjct 324166 GTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCACACTTC 324107 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGAG 221949 |||| || || ||||||| | | |||||| || | | || ||||| Sbjct 324106 -CTGGGCCTGGA--TCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCG---TAGAG 324053 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | ||||||| ||||| || ||| ||||| || ||| || |||| |||||| Sbjct 324052 CTGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCATCAG 323993 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||| | | | | ||| || | | ||| || || || |||||||||||||| | Sbjct 323992 CGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCATA 323933 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTT---TTTCCTCAGATCCAAAAA 222126 ||||| || | || ||||| || || || |||| |||| ||| || ||| Sbjct 323932 GAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAG---CAGAAA 323876 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 |||| | ||| |||||||| ||||| ||||||||||| | ||||| ||||| Sbjct 323875 GCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTACC 323816 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 ||||||||| ||||| | | |||||||| ||| || | || || || || Sbjct 323815 GCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCC 323756 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTT----ACTG 222301 ||| || ||||| || || ||||| | ||||| || | | ||| || Sbjct 323755 GTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCC-GCGCGGATGTTGTGCACGT 323697 Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 |||| ||| || || ||||| ||| ||||| ||||| ||| || ||||| Sbjct 323696 GCAG----GCCAATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCG 323641 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 |||||| || || ||| ||||| |||| || ||| || || || ||| || | Sbjct 323640 TAGATGCCGTCGATGCTGTCTTCCTTCGACG-CCACCAGGAAGCACGAGCTCATTTGCGG 323582 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 || | || | ||||||||| || || || ||||||| || ||| ||||| | ||||| Sbjct 323581 CTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACAT 323522 Query 222481 CAGATCGTACGTCTCTACG-AC--TCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCA 222537 || ||||||||||| ||| || ||| | ||| | | |||||||| | ||| Sbjct 323521 GAGGTCGTACGTCTC-ACGCACGTTCTTGAGATCT--GCGCCGTGAATGCCGAGAGCGAC 323465 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA 222568 | |||| |||| | ||| || | ||||||| Sbjct 323464 ACGCATGAACATCTGCTGTGGACGCTCCACA 323434 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 221056 CTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTT 221115 |||| | |||||| || |||||||||| | | | || || |||| | || ||| Sbjct 324928 CTCGTTTCGCATCGACTCGTTCCATAGACCACGCGCGATGAGGTCCATGACGAGGTACTT 324869 Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 |||||| || |||| || || ||||| | | ||| | ||| || || || || Sbjct 324868 GTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTAAAGGG 324809 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||| || ||||| | ||| ||||| |||||||| || || Sbjct 324808 CTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAAC 324749 Query 221236 CAGCAGACTGTTGCGCA 221252 |||||| |||||||| Sbjct 324748 CAGCAGGGAGTTGCGCA 324732 >seq15 Length=568429 Score = 152 bits (168), Expect = 1e-31 Identities = 366/539 (68%), Gaps = 21/539 (4%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | || || || || |||| ||| |||||| | | |||| ||||| | | Sbjct 410944 CTGGACGGTGGAGGAAATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAA--C 410887 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | |||| ||| || ||||| | ||| | || || || || | | || || ||| Sbjct 410886 GACGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTTTTCGCCGGCAGCGACGGCATA 410827 Query 25630 GTGAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGC-CA 25684 || | ||||||||| |||| || | |||| || || ||| || ||| ||||| | Sbjct 410826 GTCATCGAGAATCT-TGCGCAGCGCTTCATGAGCGACGTGAAG---GTGCCAGAGGCGCG 410771 Query 25685 AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGC 25744 | ||| |||||| ||||| || || || || | ||||| ||| ||| | || Sbjct 410770 CGCGTT-CTACGGGTTCCAACTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGC 410712 Query 25745 TTCTGATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAG 25803 | ||| |||||||| || ||| | |||| || | |||||| | || || || Sbjct 410711 TGCTGGACACGTACATCACGGACAGGGAGGAGA-AGCTGCGGCTGCTGCACGCGATACAG 410653 Query 25804 CACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC 25863 || || ||||| ||| ||||||| ||||||| || ||||||| ||| ||| Sbjct 410652 ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGC---AGC 410596 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 || | ||| ||||||||| | | |||||| || ||||||||||| || || ||| Sbjct 410595 GCGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGG 410536 Query 25924 TCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC 25982 ||||| |||| | | |||||||| ||| || || ||||| |||||| || Sbjct 410535 TCGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAG 410477 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||||||| | ||||||||||| |||| || || || |||||||| |||| Sbjct 410476 CAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACA 410418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842849425920