Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq21 107 2e-18 >seq21 Length=1141120 Score = 107 bits (118), Expect = 2e-18 Identities = 547/861 (64%), Gaps = 11/861 (1%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| | ||||||||||| ||||| ||||||| ||||| | ||| | | || Sbjct 323444 CCACAGCAGATGTTCATGCGTGTCGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTG 323503 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 ||||| |||||| |||||| | || | |||| ||||| || || |||||||| Sbjct 323504 CGTGAGACGTACGACCTCATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 323563 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | ||||| ||| | |||||||| | || ||||| ||| Sbjct 323564 AACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGAC 323623 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATC-TCAAAGTGGGCTGG 75450 ||| |||| ||||| | || || | |||||| ||| ||| ||||| ||| || Sbjct 323624 AGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAG-CGGCCGG 323682 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGC-CAATAAATCTCGTATTCGGGGGACAA 75509 || ||||| ||||| | || | | | || | || || || || | Sbjct 323683 CGGCATTGGCCTGCACGTGCACAACATCCGCGCGGCGGGCAGCT-ACATAGCTGGTACGA 323741 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 323742 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 323801 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| || | || ||||| | || || ||||| | Sbjct 323802 TGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACG 323861 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| || | | || || | | || |||| || | || || || Sbjct 323862 CCGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCC 323921 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || ||||| | | |||||||| ||||| || || |||| ||| | ||| || | | Sbjct 323922 GCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTG-TGAAAAGCGAG 323980 Query 75747 GTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGA 75804 | || ||| | || | ||| ||| | || || ||| ||| || | ||||| Sbjct 323981 GGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTAT-GGTGA 324039 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACC 75864 ||||||||| |||||| || || ||||| | | | ||| | | Sbjct 324040 GGAGTTTGAGCAGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGATCCA 324099 Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 ||| || || ||| || || || | || |||| ||||| || || | || Sbjct 324100 GGCCCAGGAAGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCAT 324159 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 || |||||||| || || |||| ||| ||||| |||||| | || ||||||||| | Sbjct 324160 CCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACAATCAAGTG 324219 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 ||| || || |||||||| ||| | |||||||| | | |||||||| || ||||| Sbjct 324220 CTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCGCAGGAGACGGCGGTGTGCAA 324279 Query 76045 TTTGGCATCAATCGCCCTTCC 76065 | || || ||||| || || Sbjct 324280 CCTCGCCTCCATCGCGCTGCC 324300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568347203840