Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq19 197 2e-45 seq30 136 5e-27 >seq19 Length=1061209 Score = 197 bits (218), Expect = 2e-45 Identities = 463/693 (67%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || || || ||||| || || || Sbjct 420839 GCCATCGGCATCGACCTGGGCACGACGTACTCGTGCGTGGGCGTGTGGCAGAACGAACGC 420898 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || ||| |||| ||||| || ||||| ||||| || || || || ||||| || Sbjct 420899 GTGGATATCATCGCGAACGACCAGGGTAACCGCACAACGCCGTCTTATGTGGCCTTCACC 420958 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || || | || |||||||| || || ||| || |||||||| | ||| Sbjct 420959 GAGACAGAGCGCCTGATCGGCGATGCCGCGAAGAACCAGGTGGCCATGAACCCGAGCAAC 421018 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || |||||||||||||| | || || |||||||| ||| | | || Sbjct 421019 ACCGTGTTTGACGCGAAGCGCATGATCGGCCGCAAGTTCGACGATCCTGACCTTCAGTCG 421078 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || || | || | ||||| | || | Sbjct 421079 GACATGAAGCACTGGCCCT-TCAAGGTGGTC--GTCAAGGACGGCAAGCCGGTCATCAGC 421135 Query 195599 GTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || || | || || || || ||| | || || || || ||| |||||||| | Sbjct 421136 GTCGAGTACCAGAACCAGTCCAAGACCTTTTTC-CCAGAGGAGATCTCGGCTATGGTGCT 421194 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||||| ||||| | | | | || | || || || || || || | Sbjct 421195 GCAGAAGATGAAGGAGACGGCGGAGGCCTACCTCGGCACGACCGTCAAGGACGCCGTCAT 421254 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || ||||||| || || || || ||||| || |||||||| | | || Sbjct 421255 CACCGTCCCGGCGTACTTCAACGACTCGCAGCGCCAGGCAACGAAGGACGCCGGCTCCAT 421314 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || || || ||| || | || ||||| || || || || || || || || || || Sbjct 421315 CGCTGGCCTCAACGTGCTGCGCATCATCAACGAGCCGACGGCAGCGGCCATCGCGTACGG 421374 Query 195838 TCTGGACAAGAACAAGGACG---AAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 ||||||||| | | |||| | || || || ||||||| || || || || || Sbjct 421375 CCTGGACAAGGGCGACGACGGCAAGGAGCGCAACGTGCTGATCTTCGACCTTGGCGGCGG 421434 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| ||||| | || || | || || || | ||||| |||||||| || || Sbjct 421435 CACGTTCGATGTGACGCTGCTGACGATCGAGTCCGGCGTGTTCGAGGTAAAGGCAACCGC 421494 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || || || || || ||||| ||||| Sbjct 421495 GGGTGACACGCACCTTGGCGGCGAAGACTTCGA 421527 >seq30 Length=2652413 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||||||||| ||||| || || || || || || ||| | || ||||| ||| || Sbjct 1354231 AGAATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCG 1354172 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 ||||| ||||| ||| | || || ||||| || || ||||| ||||| || || || Sbjct 1354171 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 1354112 Query 171979 CAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTAC 172038 ||||| || || || || || || || ||||| || || || || || ||| | || ||| Sbjct 1354111 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTAC 1354052 Query 172039 AACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 ||| | || |||||||| || || ||||| || || Sbjct 1354051 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCT 1354017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861018488960