Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq21 120 9e-22 seq13 102 2e-16 >seq21 Length=1141120 Score = 120 bits (132), Expect = 9e-22 Identities = 617/971 (64%), Gaps = 36/971 (4%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACA 155647 || || || || || || ||||| ||||||| | || || |||| || |||||||| Sbjct 324291 ATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATCTCCGT 324233 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 ||| ||||| || | |||||| ||||| | |||||||||||| || || ||||| || || Sbjct 324232 GCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGC 324173 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 |||||||| || ||| | || || ||||| ||||| | ||||| || | ||| Sbjct 324172 GTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCA 324113 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAG 155827 | || |||| | || |||| | | ||| || ||||| || | || || Sbjct 324112 CACTTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAG 324053 Query 155828 C-GTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 | | || | |||||||| || ||||| || || || |||||| | | ||| | || Sbjct 324052 CTGCTC-AAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCATCA 323994 Query 155887 GCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946 ||| ||| | | | | |||||| |||||| | ||| ||| | |||| Sbjct 323993 GCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCAT 323934 Query 155947 AGAAAAGGTCCCTTGC-CTTTGACTCCTC-ATCGCCGTGATTC--TTCCGTAGCTCTAAG 156002 |||| ||||| | || | || || || | ||||| | | ||| | ||| || Sbjct 323933 AGAAGAGGTCGCGGGCGCGCTG-GTCATCTTTTCCCGTGTTGCGTTTCAGCAGC----AG 323879 Query 156003 AATTCCTCA-ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT 156061 || || | | || | || ||||| ||||| | ||||| || || | ||| Sbjct 323878 AAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGCTT 323819 Query 156062 ---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118 ||||||||| || || || || || || || |||||||| | |||||| || | | Sbjct 323818 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAG 323759 Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAAT 156178 || || || ||||| || || || || | || | | ||| | || || | Sbjct 323758 CCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCAC 323699 Query 156179 ATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238 || || ||||| || || | | ||| || ||||| ||||| | || | | | Sbjct 323698 GTGCAGGCCAATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTA 323639 Query 156239 AATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGG--T 156296 || || || || || || | | | | || ||||||| || | ||| || | Sbjct 323638 GATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTT 323579 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 || |||| || ||||| || || || || || || || | || | || ||||| Sbjct 323578 CGGGGTG--CCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATG 323521 Query 156357 TAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTC 156416 ||||| ||||| | |||| |||| | |||||||| | || || ||| | | Sbjct 323520 AGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAGCGACACGC 323461 Query 156417 ATCCACATATGCTGAGGACGCTCTACAA--------TCACTCC-------ATCAATTCGC 156461 || |||| ||||| |||||||| |||| |||| || || || ||| Sbjct 323460 ATGAACATCTGCTGTGGACGCTCCACAATTCGCATCTCACCCCTTCCGGTCTCGATACGC 323401 Query 156462 AGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTG 156521 || ||||| | ||| ||||| || ||| ||||||| | || || || || ||| | Sbjct 323400 AGCAGGTACGAGCGCTCCAGCGTCTTATACCCGAAGAACTCGAAGTTCAAGTCGCGGGAG 323341 Query 156522 TAATCAATCAT 156532 || |||||||| Sbjct 323340 TAGTCAATCAT 323330 >seq13 Length=722582 Score = 102 bits (112), Expect = 2e-16 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 || ||| || || |||||||||||||| | || ||||||||| ||||| || |||||| Sbjct 1068 AACCATGCAGTCGCGCTCCATTTCACCAACGCGGAGACCACCACTGCGAGACCGACCCTC 1127 Query 251556 GGCAGGCTGACGAGTGAG-ATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCAT 251614 || ||||| |||||||| || ||| | || ||| | |||||| || ||| || Sbjct 1128 GGTTGGCTGGCGAGTGAGCATCGACCGT-GGCCCGGTCGAGCGGGCGTGCATCTTGTCTG 1186 Query 251615 TTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 | ||||| |||||||| ||||||||| | ||| || | ||||| Sbjct 1187 TGACCATGTGCTTGAGGCGCTGGTAGTAGATGGGCCCAAAGAAGA 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814431912616