Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21 194 2e-43 seq15 161 1e-33 seq20 152 6e-31 seq33 100 3e-15 seq25 98.7 1e-14 >seq21 Length=1141120 Score = 194 bits (214), Expect = 2e-43 Identities = 223/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| |||||||| ||||| |||||||| ||||| || Sbjct 323809 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGA 323750 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||| || || || | |||| ||| || ||||| | |||||| || | ||| Sbjct 323749 CGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCC 323690 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||||||||||| ||| ||| | |||||||| || ||||||||||||||||| || Sbjct 323689 AATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTC 323630 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| ||||| |||| || |||||||| ||||||| | || ||||| Sbjct 323629 GATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 323570 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||| ||||| || || || || |||||| || | |||||| |||||| || Sbjct 323569 GGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATGAGGTCGTACGT 323510 >seq15 Length=568429 Score = 161 bits (178), Expect = 1e-33 Identities = 223/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| || |||||| ||||| || ||||||| ||||||||| Sbjct 410132 GCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATC 410191 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || | ||||||||| || ||||||||| | Sbjct 410192 ATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACC 410251 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 410252 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 410311 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || ||||| Sbjct 410312 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATA 410371 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 410372 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 410430 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 410431 TGCGAAGTC 410439 Score = 136 bits (150), Expect = 5e-26 Identities = 209/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | ||||| ||||| || || | | |||||| ||| | Sbjct 410727 CCGAGTGGATGTTCTCCATCATCAGTTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 410786 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 410787 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 410846 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 |||| || || || |||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 410847 AAAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCT 410906 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | ||||| | |||||||| || ||| || |||| Sbjct 410907 TCATGTCGTTGCCCAGGTCGATTTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 410966 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||| ||||| ||||| ||||| || Sbjct 410967 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAAAGGACGTAGCGGAACGGGTTCTC 411024 Score = 107 bits (118), Expect = 2e-17 Identities = 196/286 (69%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||||| || | || || ||||| || |||||||| Sbjct 410449 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 410508 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || | |||||||| || || || || |||||||| || |||||||| Sbjct 410509 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 410568 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||||| |||||||| |||| ||| | |||| ||||||| || ||||| Sbjct 410569 GCCGATCAGCCGCTCCTGAAAG--CTCGCGCTGCTCC----CGATCCACCGCACGGCCCA 410622 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || ||||| ||| | |||| | ||| | || ||| | | || | ||| || Sbjct 410623 CTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAGCTTCTC 410682 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 || |||| ||| || ||||| | ||| | || || |||||| Sbjct 410683 CTCCCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCC 410728 >seq20 Length=1057807 Score = 152 bits (168), Expect = 6e-31 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | | |||||| ||||| || ||||||| || |||||| Sbjct 880099 GCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGAGAGATC 880158 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || | ||||||||| || ||||||||| | Sbjct 880159 ATCTCCATGAAGTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACC 880218 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 880219 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 880278 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || ||||| Sbjct 880279 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATA 880338 Query 868931 ATCT 868934 |||| Sbjct 880339 ATCT 880342 >seq33 Length=500272 Score = 100 bits (110), Expect = 3e-15 Identities = 150/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| ||||| ||||||| | ||||||| Sbjct 298054 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 298113 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 732469 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 298114 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 298172 Query 732470 GTCGCTC-AACGCCGACCACGC-CATCGACACGGTGTCGCACGCCCTGTGCTACCCGCAG 732527 ||| ||| | | || || ||| ||||| | |||| ||| | ||||||||| Sbjct 298173 ACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCAA 298231 Query 732528 GTGCCGCTGGTGCAGACC---GCCATG 732551 |||||||||| ||| |||||| Sbjct 298232 AAACCGCTGGTGCGCACCAAGGCCATG 298258 Score = 96.9 bits (106), Expect = 4e-14 Identities = 262/398 (66%), Gaps = 13/398 (3%) Strand=Plus/Plus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCG-CTCCACCGAGGACATGCCCTGGTC 733168 |||||||| |||||||||||| |||| | | | ||| ||||||||||||| || Sbjct 298775 CGCCACGGACAAAAGGGCACCAACGGCATCCAGTTTCGCCAG-GAGGACATGCCCT--TC 298831 Query 733169 GCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCAT 733228 | |||| |||| | ||| ||| || | |||||||| |||||||| || || ||||| Sbjct 298832 AAC-CGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCACGCCATTCCCTCCCGCAT 298890 Query 733229 GACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACAT 733288 ||| ||| | | || |||| | ||| ||||||||||| ||| | ||||| | Sbjct 298891 GACAGTGGCCCACCTGATCGAAACGCTCGCCGGCAAGGTGGCGTGCTACAAGGGCGGCGA 298950 Query 733289 CGGCGACGGCACGCCCTTTGGCGGCGTCACCNNNNNNNNNNNNNNNNNNGAGTTG---GC 733345 | ||| ||||| || || |||| | | |||| || Sbjct 298951 GGTGTACGCAACGCCGTTCTGCTCCGTCGTCGTGGACGACTTTGGCAAGGCGTTGCATGC 299010 Query 733346 CCGCCACGGGTGCGAGCGCTACGGCAAGGAGGTGCTCTACCACCCGCACACCGGCGAGCC 733405 || || ||| |||| |||||||| ||| |||||| | ||||||||| ||| Sbjct 299011 CCTCC---GGTCGCAGCGGTACGGCAACGAGTGTCTCTACAATGGGCACACCGGTCTGCC 299067 Query 733406 CATGGCGGCGTTGATCTTC-TCGGCGCCGGTCTACTACCAGGCCCTCCGGCACGTGGCCA 733464 ||| |||||||| ||||| || || ||||||| ||| |||| | || Sbjct 299068 GCTGGACCATCTGATCTTCTTCGGC-CCCACCTTCTACCAGCGCCTGAAGCACTTATCCG 299126 Query 733465 TCGACAAGATCCACGCGCGCCCGCGCGGTCCCGTGCAG 733502 |||||||||||||| ||||| ||||| || ||||| Sbjct 299127 GTGACAAGATCCACGCACGCCCACGCGGGCCGCTGCAG 299164 >seq25 Length=1266032 Score = 98.7 bits (108), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||| ||| | || || | |||||||| | |||||||||||||| | Sbjct 1065021 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1064962 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 |||| | || ||| | ||||||| | ||| || | |||||| | || || || ||||| Sbjct 1064961 CTTTTCGGCCCGCACGGTCATCACCGGCGATCCAAACATCGACGTCGATGAAGTCGGCGT 1064902 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 ||| | | | || |||||| |||||||| ||||| |||| Sbjct 1064901 GCCGTTCTCCGTTGCCATGACGCTGACCTTTCCGGAGCGGGTGA 1064858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107125413133256