Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21 174 2e-37 seq15 163 4e-34 seq20 154 2e-31 seq25 102 1e-15 seq33 100 5e-15 >seq21 Length=1141120 Score = 174 bits (192), Expect = 2e-37 Identities = 197/264 (75%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| || |||| ||| |||||||| ||||| ||||| || ||||| || Sbjct 323809 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGA 323750 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||| || || || | |||| ||||| ||||| | |||||| || | ||| Sbjct 323749 CGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCC 323690 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||||||||||| ||| ||| | |||||||| |||||||| ||||||||||| || Sbjct 323689 AATGCCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTC 323630 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| ||||| ||| ||| |||||||| ||||||| || ||||| Sbjct 323629 GATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 323570 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 ||| || ||||| || || || || Sbjct 323569 GGCGTTAAAGAGGGTCGGGGTGGC 323546 Score = 89.7 bits (98), Expect = 8e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || | ||||||||| || ||||||| | || ||||| ||||| || || | Sbjct 323971 CACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTG 323912 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || || || || ||| |||||| || || | | || |||||||||||| || Sbjct 323911 GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGG 323852 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||| ||||||||||||||||||||| ||||| || Sbjct 323851 CTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCCACC 323810 >seq15 Length=568429 Score = 163 bits (180), Expect = 4e-34 Identities = 242/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| || |||| Sbjct 410105 GACGTGCCCTCCGTGCTCA---TCACGCCAGCCTTCTGGTACTCCCCCACCTTCCTCTCG 410161 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 410162 AAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTCGAG 410221 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 410222 TGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 410281 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 410282 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 410341 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | ||| |||| || | | || ||| || | |||| Sbjct 410342 TCGCGCTCGATGTTCACCGCATCCACGATAATCT-CCAGCACGCGCTCGCGCGGCAGCTT 410400 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 410401 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 410439 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 410774 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 410833 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||||||||| || || |||||||| ||||| ||||| ||||| | ||| Sbjct 410834 TCGCTGCCGGCGAAAAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 410893 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||| | ||||| ||| ||||||| ||||| | ||||| | | || | Sbjct 410894 GTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATTTCCTCCACCGTCCAGATGCAGCTC 410953 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 410954 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAAAGGACGTAGCGG 411013 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 411014 AACGGGTTCTCCTGCTGCAGCGGCTC 411039 Score = 111 bits (122), Expect = 2e-18 Identities = 206/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||||| || || || ||||| || |||||||| Sbjct 410449 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 410508 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || | || ||||| || || || || |||||||| || |||||||| Sbjct 410509 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 410568 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||| |||||||| ||| | | || | | ||||||| || ||||| Sbjct 410569 GCCGATCAGCCGCTCCTGAAAGCTCGCGCTGCTCCC------GATCCACCGCACGGCCCA 410622 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| ||| | | || | ||| | || ||| | | || | |||||| Sbjct 410623 CTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAGCTTCTC 410682 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || |||| ||| ||| ||||| | || | ||||| ||||| ||||||||||| || Sbjct 410683 CTCCCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTC 410742 Query 794640 GAT 794642 || Sbjct 410743 CAT 410745 >seq20 Length=1057807 Score = 154 bits (170), Expect = 2e-31 Identities = 199/274 (73%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | | |||| Sbjct 880072 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCG 880128 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| || ||||||| |||||| | |||||| | | || Sbjct 880129 AAGAAGTTCGTTTTGCCCTGCAGAGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAG 880188 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 880189 TGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 880248 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 880249 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 880308 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 || |||||| | || || || | ||| |||| Sbjct 880309 TCGCGCTCGATGTTCACCGCATCCACGATAATCT 880342 >seq25 Length=1266032 Score = 102 bits (112), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||| ||| | |||||| | |||||||| | |||||||||||||| | Sbjct 1065021 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1064962 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||| ||| | ||||||| ||| || | |||||| | || || || ||||| Sbjct 1064961 CTTTTCGGCCCGCACGGTCATCACCGGCGATCCAAACATCGACGTCGATGAAGTCGGCGT 1064902 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 ||| | | | || |||||| |||||||| ||||| |||| Sbjct 1064901 GCCGTTCTCCGTTGCCATGACGCTGACCTTTCCGGAGCGGGTGA 1064858 >seq33 Length=500272 Score = 100 bits (110), Expect = 5e-15 Identities = 150/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| ||||| ||||| | ||||||| Sbjct 298054 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 298113 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 298114 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 298172 Query 653014 GTCGCTC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAG 653071 ||| ||| | | || || ||| |||||| | |||| ||||| ||||||||| Sbjct 298173 ACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCAA 298231 Query 653072 GTGCCGCTGGTGCAGAC---GGCCATG 653095 |||||||||| || ||||||| Sbjct 298232 AAACCGCTGGTGCGCACCAAGGCCATG 298258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916228529073752