Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21 315 7e-81 seq15 107 2e-18 >seq21 Length=1141120 Score = 315 bits (348), Expect = 7e-81 Identities = 604/870 (69%), Gaps = 29/870 (3%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCACGATTTC 147518 ||||| || || || ||||| || |||||||| | ||||| || |||||| || || || Sbjct 324294 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATCTC 324236 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||| ||||| ||| || || || | ||| | ||| || || | ||||| Sbjct 324235 CGTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCA 324176 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||||| ||| |||| ||| |||| ||||| ||||||| |||| || | ||| ||| Sbjct 324175 TGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAA 324116 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 || || ||||| || | | | || | || |||||||||| ||||| |||| Sbjct 324115 CCA---CACTTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCT 324060 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGCGGA 147753 |||| | | |||||||||| || || ||||||||| ||||| || ||| || || ||| Sbjct 324059 CGTAGAGCTGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTG-GGA 324001 Query 147754 CACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCAC 147813 |||||||| |||| | | || || || || | |||||||||||| || | |||| Sbjct 324000 TCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCAC 323941 Query 147814 AGCGCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 ||||| || | || |||| |||| || || || ||| |||||||||||| Sbjct 323940 AGCGCATAGAAGAGGTCGCGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCA 323883 Query 147872 TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTAC 147931 || | || | ||| ||||||||||||||| || | |||||||| | || || || | Sbjct 323882 GCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGC 323823 Query 147932 GCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTT 147988 |||| ||| |||||||| || | ||| | ||||||| || ||||| | ||| || Sbjct 323822 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCA 323763 Query 147989 CCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 | || ||| ||| |||||||| || | || | |||||| || || | | || Sbjct 323762 CGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGT 323703 Query 148049 GCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAATGT 148106 |||||| | |||||||||||| |||| ||||| | || | ||||| || || || Sbjct 323702 GCACGTGCAGGCCAATGCCGCCGGCCG--CTTTGCTGATCACCGCGCACTCCTTCAGCGT 323645 Query 148107 CGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACATTT 148165 ||||||||||||||||||||| | || |||||| | || || ||||| | ||||| Sbjct 323644 GTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTT 323586 Query 148166 GCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTG 148223 |||| || | || || || || ||||| || | ||||| || || || || | Sbjct 323585 GCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGG 323526 Query 148224 ACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGC 148283 | ||| | | ||||||||| ||| | || || ||||||||||||| || || Sbjct 323525 A--CATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAGC 323468 Query 148284 GACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 ||| ||||||| ||| |||||||| || || Sbjct 323467 GACACGCATGAACATCTGCTGTGGACGCTC 323438 >seq15 Length=568429 Score = 107 bits (118), Expect = 2e-18 Identities = 239/347 (69%), Gaps = 14/347 (4%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| | |||||||||||||| || |||||||||||| Sbjct 410496 ATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 410437 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || || || || ||||| ||| | | || | || | | || | || | || Sbjct 410436 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 410378 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| ||||| | ||||| |||||||| Sbjct 410377 GGAGATTATCGTGGATGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 410320 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| || ||| ||| | || || ||||| || |||| Sbjct 410319 GTGCGGC-TGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGG 410262 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCG--TAATCCGTTTGA 47206 | || ||| ||||| |||||| | ||| | || |||| | ||||| || Sbjct 410261 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCA--CTACCACTCGACGCAGCCGTTCGA 410204 Query 47207 GTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGA 47253 || ||| | | || ||||| |||||||||| || || ||||||| Sbjct 410203 ATTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGA 410157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610199116480