Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq15 248 1e-59 seq21 185 1e-40 seq20 140 5e-27 seq33 118 2e-20 seq25 98.7 1e-14 >seq15 Length=568429 Score = 248 bits (274), Expect = 1e-59 Identities = 416/595 (70%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| ||||| ||||| |||| ||||| Sbjct 411039 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTTTTCCCAATCCAGTACCATGAC 410980 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | ||||| ||||||| Sbjct 410979 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAAATCGACCT 410921 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 410920 GGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 410861 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 || || |||||||| ||||| |||||| ||||| || |||||| || || |||| Sbjct 410860 TGTGCTTGCCTTTTT-CGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCT 410802 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||||||||| || ||| ||||||||||| | || | Sbjct 410801 TCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAACTGATGATGG 410742 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | ||| | ||||| ||| ||| |||| || | Sbjct 410741 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGGGAGG 410682 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| || | ||| | |||| | ||| ||||| || | Sbjct 410681 AGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAGT 410622 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| || ||||||| |||| | ||| |||| |||||||| ||||||| Sbjct 410621 GGGCCGTGCGGTGGATC----GGGAGCAGCGCGA-GCTTTCAGGAGCGGCTGATCGGCTT 410567 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 |||||| || |||||||| || || || || |||||||| | || ||||| ||||| Sbjct 410566 TGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAA 410507 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||| || ||||| || || | || |||||||| | ||| |||||||| Sbjct 410506 GCGCGGTCTGATGCCAGGGCTGACG-TTCAGCAACGAGCTCATCTCGCGCGACGA 410453 Score = 147 bits (162), Expect = 3e-29 Identities = 229/320 (72%), Gaps = 13/320 (4%) Strand=Plus/Minus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCGA---CGTG 1456513 ||||| || || ||||| |||| || | |||| ||||| | || ||| |||| Sbjct 410439 GACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTG 410380 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 | | |||| ||||| || || || | |||||| ||||| || |||| ||||| Sbjct 410379 CT---GGAGATTATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTG 410323 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 |||||| ||| || ||||||||||| ||| ||| |||||||| || || |||| Sbjct 410322 CCGGTGCGGCTGATTGGCATGAACGCGGA-GCTGATGGCGCAGTACATCGAGTTC-GTCG 410265 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 | ||||| ||||| | | |||||||| | |||||||||||||| || | | |||||| Sbjct 410264 CGGACCGGCTGCTGGTGTCGCTCGGC-GAGGAGAAGCACTACCACTCGACGCAGCCGTTC 410206 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGC 1456752 || |||||| |||||||||| ||||||| || ||||| |||||| | || || Sbjct 410205 GAATTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAGGAAGGTGGGG 410146 Query 1456753 GAGTACGCCAAGGCCGGCGT 1456772 |||||| ||||| ||||| Sbjct 410145 GAGTACCAGAAGGCTGGCGT 410126 >seq21 Length=1141120 Score = 185 bits (204), Expect = 1e-40 Identities = 277/391 (71%), Gaps = 17/391 (4%) Strand=Plus/Plus Query 259793 GTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGAC 259852 || ||||| || ||| | ||| ||||||||||||| || ||| ||| || Sbjct 323435 GTGGAGCGTCCACAGCAGATGTTCATGCGTGTCGCTCTCGGC-ATTC-----------AC 323482 Query 259853 GTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTC 259912 | || || || || |||||| | || ||||| |||||| || || ||| Sbjct 323483 GGCGCAGAT---CTCAAGAACGTGCGTGAGACGTACGACCTCATGTCCAAGGGCTTCTTC 323539 Query 259913 ACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG-TCGTG 259971 ||| || || || || |||||||| |||||||| ||| ||||| ||| | ||||| Sbjct 323540 ACCCACGCCACCCCGACCCTCTTTAACGCCGGCACCCCGAAGCCGCA-AATGAGCTCGTG 323598 Query 259972 CTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTG 260031 ||| ||| ||| ||||| || ||||| |||||||| |||||||| ||| |||| Sbjct 323599 CTTCCTGGTGGCGTCGAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTG 323658 Query 260032 CGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGC 260091 |||| | ||| ||| |||||||||||||| || | || ||||| | ||||| || Sbjct 323659 CGCGGTGATCAGCAAAGCGGCCGGCGGCATTGGCCTGCACGTGCACAACATCCGCGCGGC 323718 Query 260092 GGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGT 260151 |||| |||| | || || || |||||| ||| ||||| || ||||| ||||| ||||| Sbjct 323719 GGGCAGCTACATAGCTGGTACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGT 323778 Query 260152 TTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||| |||| || |||||||| |||||| Sbjct 323779 CTTCAACAACACCGCCCGCTACGTGGACCAG 323809 >seq20 Length=1057807 Score = 140 bits (154), Expect = 5e-27 Identities = 186/253 (74%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||| ||||| || || || | |||||| ||||| || |||| ||||||||||| Sbjct 880342 AGATTATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGC 880283 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| || ||||||||||| ||| ||| |||||||| || || ||||| ||||| Sbjct 880282 GGCTGATTGGCATGAACGCGGA-GCTGATGGCGCAGTACATCGAGTTC-GTCGCGGACCG 880225 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||| | | |||||||| | |||||||||||||| || | | |||||| | | Sbjct 880224 GCTGCTGGTGTCGCTCGGC-GAGGAGAAGCACTACCACTCGACGCAGCCGTTCGACTTCA 880166 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 ||||| ||||||| || ||||||| || ||||| |||||| | || || |||||| Sbjct 880165 TGGAGATGATCTCTCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGTACC 880106 Query 1456760 CCAAGGCCGGCGT 1456772 ||||||||||| Sbjct 880105 AGAAGGCCGGCGT 880093 >seq33 Length=500272 Score = 118 bits (130), Expect = 2e-20 Identities = 310/465 (67%), Gaps = 15/465 (3%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| |||| || | || ||| | | | ||| |||||| | || |||| Sbjct 299230 CTCCATCTCGCCAAACCGCAGTCCCCCCTCGTGTGCGCGACCCTCG----GTTGGTTGGC 299175 Query 1600318 G----AGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGC 1600373 | ||| ||| | || |||||||| || ||||| |||||||| || | ||| Sbjct 299174 GCACCAGCGGCTGCAGCGGCCCGCGTGGGCGTGCGTGGATCTTGTCACCGGATAAGTGCT 299115 Query 1600374 GCAGGGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTG 1600432 |||| ||||||| || || |||| | ||||||| |||| ||| |||||| Sbjct 299114 TCAGGCGCTGGTAGAAGGTGGG-GCCGAAGAAGATCAGATGGTCCAGCGGCAGACCGGTG 299056 Query 1600433 TGCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGGCGAGCCAACTCGGCG 1600492 ||| | |||||| ||| |||||||| |||| | | | || | |||| | | Sbjct 299055 TGCCCATTGTAGAGACACTCGTTGCCGTACCGCTGCGACCGGAGGGCATGCAACGCCTTG 298996 Query 1600493 GCGACATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGG 1600552 | | ||||| ||| |||| || || ||||| ||| || | ||||| | | Sbjct 298995 CCAAAGTCGTCCACGACGACGGAGCAGAACGGCGTTGCGTACACCTCGCCGCCCTTGTAG 298936 Query 1600553 CAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATG 1600612 || ||||||||||| ||| | || |||| | | ||| |||||||| || || ||| Sbjct 298935 CACGCCACCTTGCCGGCGAGCGTTTCGATCAGGTGGGCCACTGTCATGCGGGAGGGAATG 298876 Query 1600613 GCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCC 1600672 ||||| |||||||| | | ||| ||| | ||| |||| | || ||||||||||| Sbjct 298875 GCGTGGGGGTTGATGATGAGGTCCGGCACGATGCCGTCGCG-GTTGA--AGGGCATGTCC 298819 Query 1600673 TCGGTGGAG-CGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCG 1600716 || ||| | | | |||| |||||||||||| |||||||| Sbjct 298818 TC-CTGGCGAAACTGGATGCCGTTGGTGCCCTTTTGTCCGTGGCG 298775 Score = 96.9 bits (106), Expect = 5e-14 Identities = 149/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 1601263 CATGGC---GGTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTC 1601319 |||||| ||| |||||||||| ||||||||| | ||| |||| | ||||| Sbjct 298258 CATGGCCTTGGTGCGCACCAGCGGTTTTTGCGGGTAGAAGAGGACGTGGGCGGTGGTGTC 298199 Query 1601320 GATG-GCATGGTCGGCGTT-GAGCGACACGACGGCCTTGCTCTGCTTGCCCATGGCCGTC 1601377 ||| ||||| | | ||| ||| | || | || || |||||| |||||||| | | Sbjct 298198 CATGCGCATGTT-GAAGTTCGAGGCGTA-GATGCCCATGGCCTGCTTACCCATGGCGGAC 298141 Query 1601378 TGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCG 1601437 |||||| |||||||||| | |||||||||||||| ||||||| ||||| ||||| | Sbjct 298140 TGGTAGGTGTTGCGCGGGGACTGGTTGTGGTTGGGGTACGGGATAATGGAGGCGCAAATG 298081 Query 1601438 CCCAGCATGAGCAGCGGGTGGACCTCG 1601464 || || || | | ||||| | |||| Sbjct 298080 CCGAGAATCATCGACGGGTCCATCTCG 298054 >seq25 Length=1266032 Score = 98.7 bits (108), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 1818082 TCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCAA 1818141 |||| ||||| |||||||| |||||| || | | | |||||||| || || || | Sbjct 1064858 TCACCCGCTCCGGAAAGGTCAGCGTCATGGCAACGGAGAACGGCACGCCGACTTCATCGA 1064917 Query 1818142 TGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCA 1818201 ||| || | || ||| | ||||||| | ||| || | ||||| ||||||||||||| Sbjct 1064918 CGTCGATGTTTGGATCGCCGGTGATGACCGTGCGGGCCGAAAAGTCTACGCGCTTGCCCA 1064977 Query 1818202 TGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 | | |||||||| | || ||| | ||| ||||| | ||||||| Sbjct 1064978 TCAAGTTGCCGCGCAGCCGGCCGTACTTCCCCTTCAGCCGCTCC 1065021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177794996091216