Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq21 134 2e-26 seq16 86.0 8e-12 seq30 82.4 1e-10 seq17 82.4 1e-10 seq8 82.4 1e-10 >seq21 Length=1141120 Score = 134 bits (148), Expect = 2e-26 Identities = 558/865 (65%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || |||||||| | | |||||||| | | Sbjct 324300 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 324241 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || |||| ||| || | ||| || || || | |||||| ||||| ||| || Sbjct 324240 ATCTCCGTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTTGCTG 324181 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| || ||||||||||| ||| | ||| |||||||| |||| || | || || Sbjct 324180 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 324121 Query 111410 GCCTTCCAAACATCGGCGGC-TGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || || ||| ||| || | ||| ||| || ||||| | |||||| Sbjct 324120 GCAAACCACACTTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 324065 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGT 111524 |||||| |||||||||||||| | || ||| ||| || || | ||| Sbjct 324064 GCGCTCGTAGAGCTGCTCAAACTCCTCACC-ATAGCAATCGCTGAGGCCCGGGCACGTGT 324006 Query 111525 CTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 ||| | || | ||| || || | | ||| | ||| |||| || || ||||| Sbjct 324005 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCA-CACGCCTCATAAACAGATCTGGG 323947 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 |||||||| | | ||||| || | || || || | || |||| || Sbjct 323946 ATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 323887 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | | || || | | || || |||||||| ||||| |||||||| || | | ||| Sbjct 323886 AGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCC 323827 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || || ||| | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 323826 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 323767 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG-GCTCTCAC 111819 || | | || | || || || || || || || | || | | Sbjct 323766 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGT-AGCTGCCCGCCGCGCGGAT 323708 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA-GATTTGCGCACACTCCGTAA 111878 | || | ||||| ||||| || || ||| ||||| ||| ||| |||||| | | Sbjct 323707 GTTGTGCACGTGCAGGCCAATGCCGCCGGCCG-CTTTGCTGATCACCGCGCACTCCTTCA 323649 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 323648 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 323589 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 323588 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 323529 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||| |||||| ||||| || | | ||| | ||||| ||||||| | Sbjct 323528 TGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAG 323469 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 |||| ||||||||||| | |||||| Sbjct 323468 CGACACGCATGAACATCTGCTGTGG 323444 >seq16 Length=772477 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 227523 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 227464 Query 145344 GGTAGGA 145350 ||||||| Sbjct 227463 GGTAGGA 227457 >seq30 Length=2652413 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1585915 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1585856 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1585855 CAGGTAGGAG 1585846 >seq17 Length=844406 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 624655 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 624714 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 624715 CAGGTAGGAG 624724 >seq8 Length=685498 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 438029 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 437970 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 437969 CAGGTAGGAG 437960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030681132800