Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq21 116 4e-21 >seq21 Length=1141120 Score = 116 bits (128), Expect = 4e-21 Identities = 555/865 (64%), Gaps = 19/865 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||||||||||| || || |||| ||||| || | ||| | | || Sbjct 323444 CCACAGCAGATGTTCATGCGTGTCGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTG 323503 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||| |||||| |||||| | || | |||| ||||| || || |||||||| Sbjct 323504 CGTGAGACGTACGACCTCATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 323563 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || |||||| | |||||||| | || ||||| ||| Sbjct 323564 AACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGAC 323623 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCT-CAAAGTGGGCTGG 104460 ||| |||| ||||| | || || | |||||| ||| ||| ||||| || | || Sbjct 323624 AGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAGCGGCC-GG 323682 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 || ||||| ||||| | || | | | || | || || || || | Sbjct 323683 CGGCATTGGCCTGCACGTGCACAACATCCGCGCGGCGGGCAGCTAC-ATAGCTGGTACGA 323741 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 323742 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 323801 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | ||| || || ||||| | | || |||||||| ||||| ||||||| Sbjct 323802 TGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACG 323861 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || || | | || || | || | |||| || | || || ||| || Sbjct 323862 CCGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCC 323921 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAGAGT 104755 |||| ||||||| || || ||||| |||||||| || |||| | | || | | ||| Sbjct 323922 GCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAGG 323981 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 || || ||| | || | ||| ||| | || || ||| |||| | |||||| Sbjct 323982 GG-AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAG 324040 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGGTGCC 104874 |||||||| || ||| |||||| || || || |||| | |||| | || Sbjct 324041 GAGTTTGAGCAGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-CC 324098 Query 104875 AGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 || ||| || |||||| || || || |||| || | |||||| || || | Sbjct 324099 AG--GCCCAGGAAGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTT 324156 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 ||| || ||||| ||||| || ||| ||| || || |||||| | || ||||| Sbjct 324157 CATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACAATCAA 324216 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG-ATGAGACGGCTGTGT 105050 | | || || || || || || || | || | || | | | | |||||||| |||| Sbjct 324217 GTGCTCGAACCTATGCACGGAGATTGTCGAGTACAC-GTCGCCGCAGGAGACGGCGGTGT 324275 Query 105051 GTAACCTCGCATCAATCGCTCTCCC 105075 | |||||||| || ||||| || || Sbjct 324276 GCAACCTCGCCTCCATCGCGCTGCC 324300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259575152320